Tin Chi Nguyen

Orcid: 0000-0001-8001-9470

Affiliations:
  • University of Nevada, Reno, USA


According to our database1, Tin Chi Nguyen authored at least 31 papers between 2011 and 2023.

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Bibliography

2023
A robust and accurate single-cell data trajectory inference method using ensemble pseudotime.
BMC Bioinform., December, 2023

Provenance documentation to enable explainable and trustworthy AI: A literature review.
Data Intell., 2023

2022
A comprehensive survey of the approaches for pathway analysis using multi-omics data integration.
Briefings Bioinform., November, 2022

ViT-DeiT: An Ensemble Model for Breast Cancer Histopathological Images Classification.
CoRR, 2022

DrGA: cancer driver gene analysis in a simpler manner.
BMC Bioinform., 2022

DWEN: A novel method for accurate estimation of cell type compositions from bulk data samples.
Proceedings of the 14th International Conference on Knowledge and Systems Engineering, 2022

2021
CPA: a web-based platform for consensus pathway analysis and interactive visualization.
Nucleic Acids Res., 2021

A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data.
Briefings Bioinform., 2021

scIDS: Single-cell Imputation by combining Deep autoencoder neural networks and Subspace regression.
Proceedings of the 13th International Conference on Knowledge and Systems Engineering, 2021

Single-cell RNA sequencing data imputation using similarity preserving network.
Proceedings of the 13th International Conference on Knowledge and Systems Engineering, 2021

2020
GSMA: an approach to identify robust global and test Gene Signatures using Meta-Analysis.
Bioinform., 2020

Integrated Cancer Subtyping using Heterogeneous Genome-Scale Molecular Datasets.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Analysis of Short-read Aligners using Genome Sequence Complexity.
Proceedings of the 12th International Conference on Knowledge and Systems Engineering, 2020

Disease subtyping using community detection from consensus networks.
Proceedings of the 12th International Conference on Knowledge and Systems Engineering, 2020

2019
PINSPlus: a tool for tumor subtype discovery in integrated genomic data.
Bioinform., 2019

RIA: a novel Regression-based Imputation Approach for single-cell RNA sequencing.
Proceedings of the 11th International Conference on Knowledge and Systems Engineering, 2019

MGKA: A genetic algorithm-based clustering technique for genomic data.
Proceedings of the IEEE Congress on Evolutionary Computation, 2019

2018
A survey of the approaches for identifying differential methylation using bisulfite sequencing data.
Briefings Bioinform., 2018

MIA: Multi-cohort Integrated Analysis for Biomarker Identification.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
DANUBE: Data-Driven Meta-ANalysis Using UnBiased Empirical Distributions - Applied to Biological Pathway Analysis.
Proc. IEEE, 2017

MicroRNA-Augmented Pathways (mirAP) and Their Applications to Pathway Analysis and Disease Subtyping.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2016
A novel bi-level meta-analysis approach: applied to biological pathway analysis.
Bioinform., 2016

A Systems Biology Approach for Unsupervised Clustering of High-Dimensional Data.
Proceedings of the Machine Learning, Optimization, and Big Data, 2016

TOMAS: A novel TOpology-aware Meta-Analysis approach applied to System biology.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

2013
SPATA: A Seeding and Patching Algorithm for Hybrid Transcriptome Assembly.
CoRR, 2013

MarkovBin: An Algorithm to Cluster Metagenomic Reads Using a Mixture Modeling of Hierarchical Distributions.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
SASeq: A Selective and Adaptive Shrinkage Approach to Detect and Quantify Active Transcripts using RNA-Seq
CoRR, 2012

<i>QSEA</i> for fuzzy subgraph querying of KEGG pathways.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
SPATA: A seeding and patching algorithm for de novo transcriptome assembly.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

SPATA: A highly accurate GUI tool for de novo transcriptome assembly.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

iQuant: A fast yet accurate GUI tool for transcript quantification.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011


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