E. Michael Gertz

Orcid: 0000-0001-8390-4387

Affiliations:
  • National Center for Biotechnology Information, Bethesda, MD, USA
  • University of Wisconsin at Madison, Computer Science Department, WI, USA
  • Argonne National Laboratory, Mathematics and Computer Science Division, IL, USA
  • University of California, San Diego, CA, USA (PhD)


According to our database1, E. Michael Gertz authored at least 15 papers between 2001 and 2021.

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Bibliography

2021
Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data.
Bioinform., 2021

2020
Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data.
J. Comput. Biol., 2020

PhISCS-BnB: a fast branch and bound algorithm for the perfect tumor phylogeny reconstruction problem.
Bioinform., 2020

2018
Tumor Copy Number Data Deconvolution Integrating Bulk and Single-cell Sequencing Data.
Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

2015
Inferring models of multiscale copy number evolution for single-tumor phylogenetics.
Bioinform., 2015

2014
PSEUDOMARKER 2.0: efficient computation of likelihoods using NOMAD.
BMC Bioinform., 2014

2010
Using an iterative linear solver in an interior-point method for generating support vector machines.
Comput. Optim. Appl., 2010

2008
The effectiveness of position- and composition-specific gap costs for protein similarity searches.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2006
A Fast and Symmetric DUST Implementation to Mask Low-Complexity DNA Sequences.
J. Comput. Biol., 2006

WindowMasker: window-based masker for sequenced genomes.
Bioinform., 2006

2004
A primal-dual trust region algorithm for nonlinear optimization.
Math. Program., 2004

A quasi-Newton trust-region method.
Math. Program., 2004

A starting point strategy for nonlinear interior methods.
Appl. Math. Lett., 2004

2003
Object-oriented software for quadratic programming.
ACM Trans. Math. Softw., 2003

2001
Users Guide for SnadiOpt: A Package Adding Automatic Differentiation to Snopt
CoRR, 2001


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