Stephen F. Altschul

According to our database, Stephen F. Altschul authored at least 21 papers between 1989 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

eCOMPASS: evaluative comparison of multiple protein alignments by statistical score.

Andrew F. Neuwald, Bryan D. Kolaczkowski, Stephen F. Altschul

Bioinform., 2021

2018

Statistical investigations of protein residue direct couplings.

Andrew F. Neuwald, Stephen F. Altschul

PLoS Comput. Biol., 2018

Initial Cluster Analysis.

Stephen F. Altschul, Andrew F. Neuwald

J. Comput. Biol., 2018

Outlier detection in BLAST hits.

Nidhi Shah, Stephen F. Altschul, Mihai Pop

Algorithms Mol. Biol., 2018

2016

Inference of Functionally-Relevant N-acetyltransferase Residues Based on Statistical Correlations.

Andrew F. Neuwald, Stephen F. Altschul

PLoS Comput. Biol., 2016

Bayesian Top-Down Protein Sequence Alignment with Inferred Position-Specific Gap Penalties.

Andrew F. Neuwald, Stephen F. Altschul

PLoS Comput. Biol., 2016

2015

Log-odds sequence logos.

Yi-Kuo Yu, John A. Capra, Aleksandar Stojmirovic, David Landsman, Stephen F. Altschul

Bioinform., 2015

2013

Dirichlet Mixtures, the Dirichlet Process, and the Structure of Protein Space.

Viet-An Nguyen, Jordan L. Boyd-Graber, Stephen F. Altschul

J. Comput. Biol., 2013

2011

The Complexity of the Dirichlet Model for Multiple Alignment Data.

Yi-Kuo Yu, Stephen F. Altschul

J. Comput. Biol., 2011

On the Inference of Dirichlet Mixture Priors for Protein Sequence Comparison.

Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul

J. Comput. Biol., 2011

An assessment of substitution scores for protein profile-profile comparison.

Xugang Ye, Guoli Wang, Stephen F. Altschul

Bioinform., 2011

2010

The Construction and Use of Log-Odds Substitution Scores for Multiple Sequence Alignment.

Stephen F. Altschul, John C. Wootton, Elena Zaslavsky, Yi-Kuo Yu

PLoS Comput. Biol., 2010

Compositional Adjustment of Dirichlet Mixture Priors.

Xugang Ye, Yi-Kuo Yu, Stephen F. Altschul

J. Comput. Biol., 2010

2008

Local Alignment (with Affine Gap Weights).

Stephen F. Altschul, Bruce W. Erickson, Henry Leung

Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

The effectiveness of position- and composition-specific gap costs for protein similarity searches.

Aleksandar Stojmirovic, E. Michael Gertz, Stephen F. Altschul, Yi-Kuo Yu

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2005

The construction of amino acid substitution matrices for the comparison of proteins with non-standard compositions.

Yi-Kuo Yu, Stephen F. Altschul

Bioinform., 2005

A structure-based method for protein sequence alignment.

Maricel G. Kann, Paul A. Thiessen, Anna R. Panchenko, Alejandro A. Schäffer, Stephen F. Altschul, Stephen H. Bryant

Bioinform., 2005

1999

IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.

Alejandro A. Schäffer, Yuri I. Wolf, Chris P. Ponting, Eugene V. Koonin, L. Aravind, Stephen F. Altschul

Bioinform., 1999

1994

A Gibbs Sampler for the Detection of Subtle Motifs in Multiple Sequences.

Charles E. Lawrence, Stephen F. Altschul, John C. Wootton, Mark S. Boguski, Andrew F. Neuwald, Jun S. Liu

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1991

BioSCAN: A VLSI-Based System for Biosequence Analysis.

C. Thomas White, Raj K. Singh, Peter B. Reintjes, Jordan Lampe, Bruce W. Erickson, Wayne D. Dettloff, Vernon L. Chi, Stephen F. Altschul

Proceedings of the Proceedings 1991 IEEE International Conference on Computer Design: VLSI in Computer & Processors, 1991

1989

Leaf Pairs and Tree Dissections.

Stephen F. Altschul

SIAM J. Discret. Math., 1989