Edward J. Perkins

According to our database1, Edward J. Perkins authored at least 50 papers between 2006 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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On csauthors.net:

Bibliography

2019
Keanu: a novel visualization tool to explore biodiversity in metagenomes.
BMC Bioinformatics, 2019

2017
Physiological fidelity or model parsimony? The relative performance of reverse-toxicokinetic modeling approaches.
BMC Systems Biology, 2017

2016
The Structural Role of Feed-Forward Loop Motif in Transcriptional Regulatory Networks.
MONET, 2016

Novel enhanced applications of QSPR models: Temperature dependence of aqueous solubility.
Journal of Computational Chemistry, 2016

2015
Contribution of canonical feed-forward loop motifs on the fault-tolerance and information transport efficiency of transcriptional regulatory networks.
Nano Comm. Netw., 2015

Capacity estimates of additive inverse Gaussian molecular channels with relay characteristics.
Proceedings of the BICT 2015, 2015

Abundance of connected motifs in transcriptional networks, a case study using random forests regression.
Proceedings of the BICT 2015, 2015

2014
Leveraging the robustness of genetic networks: a case study on bio-inspired wireless sensor network topologies.
J. Ambient Intelligence and Humanized Computing, 2014

Gene regulatory network inference and validation using relative change ratio analysis and time-delayed dynamic Bayesian network.
EURASIP J. Bioinformatics and Systems Biology, 2014

Networks of interactions between feed-forward loop transcriptional motifs in gene-regulatory networks.
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014

Dynamical impacts from structural redundancy of transcriptional motifs in gene-regulatory networks.
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014

Feature ranking in transcriptional networks: Packet receipt as a dynamical metric.
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014

Correlating In silico Feed-forward Loop Knockout Experiments with the Topological Features of Transcriptional Regulatory Networks.
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014

2013
Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment.
BMC Bioinformatics, 2013

Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinformatics, 2013

Deciphering chemically-induced reversible neurotoxicity by reconstructing perturbed pathways from time series microarray gene expression data.
Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013

2012
Performance of wireless sensor topologies inspired by E. coli genetic networks.
Proceedings of the Tenth Annual IEEE International Conference on Pervasive Computing and Communications, 2012

sCoIn: A scoring algorithm based on complex interactions for reverse engineering regulatory networks.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012

Genome scale inference of transcriptional regulatory networks using mutual information on complex interactions.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
State Space Model with hidden variables for reconstruction of gene regulatory networks.
BMC Systems Biology, 2011

Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinformatics, 2011

First-passage time analysis of a one-dimensional diffusion-reaction model: application to protein transport along DNA.
BMC Bioinformatics, 2011

RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags.
BMC Bioinformatics, 2011

Principles of genomic robustness inspire fault-tolerant WSN topologies: A network science based case study.
Proceedings of the Ninth Annual IEEE International Conference on Pervasive Computing and Communications, 2011

sREVEAL: Scalable extensions of REVEAL towards regulatory network inference.
Proceedings of the 11th International Conference on Intelligent Systems Design and Applications, 2011

Poster: Gene regulatory network inference using time lagged context likelihood of relatedness.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

A Scalable Information Theory Based Gene Regulatory Network Inference Method from Time Series and Knock-Out Data.
Proceedings of the ISCA 3rd International Conference on Bioinformatics and Computational Biology, 2011

Downstream Exploration of DNA-Bound Searching Proteins: A Diffusion-Reaction Model.
Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, 2011

2010
In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species.
Computational Biology and Chemistry, 2010

Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk.
BMC Systems Biology, 2010

In vitro gene regulatory networks predict in vivo function of liver.
BMC Systems Biology, 2010

A novel gene network inference algorithm using predictive minimum description length approach.
BMC Systems Biology, 2010

Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinformatics, 2010

Quail Genomics: a knowledgebase for Northern bobwhite.
BMC Bioinformatics, 2010

Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks.
BMC Bioinformatics, 2010

Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

In silico identification of microRNAs from expressed sequence tags of three earthworm species.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

Effects of cDNA microarray time-series data size on gene regulatory network inference accuracy.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2009
Discovery of Biomarker Genes from Earthworm Microarray Data by Discriminant Analysis and Clustering.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information.
Proceedings of the International Joint Conferences on Bioinformatics, 2009

Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus).
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008
GOfetcher: a database with complex searching facility for gene ontology.
Bioinformatics, 2008

Creating a Workflow for Expressed Sequence Tags Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008

2007
Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm Eisenia fetida.
BMC Bioinformatics, 2007

Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks.
BMC Bioinformatics, 2007

An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine.
BMC Bioinformatics, 2006

Comparison of Gene Expression Effects in Liver Tissue and Primary Hepatocyte Cell Cultures After Exposure to Hexahydro-1, 3, 5Trinitro-1, 3, 5-Triazine.
Proceedings of the Interdisciplinary and Multidisciplinary Research in Computer Science, 2006


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