Edward J. Perkins
Affiliations:- US Army Engineer Research and Development Center, Vicksburg, MS, USA
According to our database1,
Edward J. Perkins
authored at least 52 papers
between 2006 and 2023.
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Bibliography
2023
Proceedings of the IEEE International Systems Conference, 2023
2019
BMC Bioinform., 2019
2018
Low SWaP, In-Situ Data Logger for Strain Measurement of Paddlefish Rostrums in Motion.
Proceedings of the 9th IEEE Annual Ubiquitous Computing, 2018
2017
Physiological fidelity or model parsimony? The relative performance of reverse-toxicokinetic modeling approaches.
BMC Syst. Biol., 2017
2016
The Structural Role of Feed-Forward Loop Motif in Transcriptional Regulatory Networks.
Mob. Networks Appl., 2016
Abundance of connected motifs in transcriptional networks, a case study using random forests regression.
EAI Endorsed Trans. Mob. Commun. Appl., 2016
Novel enhanced applications of QSPR models: Temperature dependence of aqueous solubility.
J. Comput. Chem., 2016
Capacity estimates of additive inverse Gaussian molecular channels with relay characteristics.
EAI Endorsed Trans. Wirel. Spectr., 2016
2015
Contribution of canonical feed-forward loop motifs on the fault-tolerance and information transport efficiency of transcriptional regulatory networks.
Nano Commun. Networks, 2015
2014
Leveraging the robustness of genetic networks: a case study on bio-inspired wireless sensor network topologies.
J. Ambient Intell. Humaniz. Comput., 2014
Gene regulatory network inference and validation using relative change ratio analysis and time-delayed dynamic Bayesian network.
EURASIP J. Bioinform. Syst. Biol., 2014
Networks of interactions between feed-forward loop transcriptional motifs in gene-regulatory networks.
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014
Dynamical impacts from structural redundancy of transcriptional motifs in gene-regulatory networks.
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014
Correlating In silico Feed-forward Loop Knockout Experiments with the Topological Features of Transcriptional Regulatory Networks.
Proceedings of the 8th International Conference on Bio-inspired Information and Communications Technologies, 2014
2013
Differential reconstructed gene interaction networks for deriving toxicity threshold in chemical risk assessment.
BMC Bioinform., 2013
Proceedings of the 2013 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform., 2013
Deciphering chemically-induced reversible neurotoxicity by reconstructing perturbed pathways from time series microarray gene expression data.
Proceedings of the 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, 2013
2012
Proceedings of the Tenth Annual IEEE International Conference on Pervasive Computing and Communications, 2012
sCoIn: A scoring algorithm based on complex interactions for reverse engineering regulatory networks.
Proceedings of the 12th IEEE International Conference on Bioinformatics & Bioengineering, 2012
Genome scale inference of transcriptional regulatory networks using mutual information on complex interactions.
Proceedings of the ACM International Conference on Bioinformatics, 2012
2011
State Space Model with hidden variables for reconstruction of gene regulatory networks.
BMC Syst. Biol., 2011
Proceedings of the 2011 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform., 2011
First-passage time analysis of a one-dimensional diffusion-reaction model: application to protein transport along DNA.
BMC Bioinform., 2011
RefNetBuilder: a platform for construction of integrated reference gene regulatory networks from expressed sequence tags.
BMC Bioinform., 2011
Principles of genomic robustness inspire fault-tolerant WSN topologies: A network science based case study.
Proceedings of the Ninth Annual IEEE International Conference on Pervasive Computing and Communications, 2011
Proceedings of the 11th International Conference on Intelligent Systems Design and Applications, 2011
Poster: Gene regulatory network inference using time lagged context likelihood of relatedness.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
A Scalable Information Theory Based Gene Regulatory Network Inference Method from Time Series and Knock-Out Data.
Proceedings of the ISCA 3rd International Conference on Bioinformatics and Computational Biology, 2011
Proceedings of the 11th IEEE International Conference on Bioinformatics and Bioengineering, 2011
2010
In silico identification of conserved microRNAs and their target transcripts from expressed sequence tags of three earthworm species.
Comput. Biol. Chem., 2010
Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk.
BMC Syst. Biol., 2010
BMC Syst. Biol., 2010
A novel gene network inference algorithm using predictive minimum description length approach.
BMC Syst. Biol., 2010
Proceedings of the 2010 MidSouth Computational Biology and Bioinformatics Society (MCBIOS) Conference.
BMC Bioinform., 2010
Time lagged information theoretic approaches to the reverse engineering of gene regulatory networks.
BMC Bioinform., 2010
Performance evaluation of the time-delayed dynamic Bayesian network approach to inferring gene regulatory networks from time series microarray data.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
In silico identification of microRNAs from expressed sequence tags of three earthworm species.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
Effects of cDNA microarray time-series data size on gene regulatory network inference accuracy.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010
2009
Discovery of Biomarker Genes from Earthworm Microarray Data by Discriminant Analysis and Clustering.
Proceedings of the International Joint Conferences on Bioinformatics, 2009
Gene Regulatory Network Inference Using Predictive Minimum Description Length Principle and Conditional Mutual Information.
Proceedings of the International Joint Conferences on Bioinformatics, 2009
Generation and Analysis of Expressed Sequence Tags from the Sheepshead Minnow (Cyprinodon Variegatus).
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009
2008
Bioinform., 2008
Creating a Workflow for Expressed Sequence Tags Analysis.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Inferring Gene Regulatory Network of Yeast Cell-Cycle using Dynamic Bayesian Network.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
A Strategy for High Throughput Microarray Oligo Probe Design Using 454 and Sanger Sequencing Data of Eisenia fetida Expressed Sequence Tags.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
2007
Cloning, analysis and functional annotation of expressed sequence tags from the Earthworm <i>Eisenia fetida</i>.
BMC Bioinform., 2007
Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks.
BMC Bioinform., 2007
An Effective Interwoven Loop Design Application for Two-Channel Microarray Experiments.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2006
Comparison of transcriptional responses in liver tissue and primary hepatocyte cell cultures after exposure to hexahydro-1, 3, 5-trinitro-1, 3, 5-triazine.
BMC Bioinform., 2006
Comparison of Gene Expression Effects in Liver Tissue and Primary Hepatocyte Cell Cultures After Exposure to Hexahydro-1, 3, 5Trinitro-1, 3, 5-Triazine.
Proceedings of the Interdisciplinary and Multidisciplinary Research in Computer Science, 2006