Jason E. Shoemaker

According to our database, Jason E. Shoemaker authored at least 13 papers between 2009 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

A detailed kinetic model of Eastern equine encephalitis virus replication in a susceptible host cell.

Caroline I. Larkin, Matthew D. Dunn, Jason E. Shoemaker, William B. Klimstra, James R. Faeder

PLoS Comput. Biol., 2025

Mathematical model of influenza infection suggests JAK-STAT activity drives severe pathologies in juvenile mice.

Lauren L. Luciani, Lauren M. Nichols, Brydie R. Huckestein, John F. Alcorn, Jason E. Shoemaker

Frontiers Appl. Math. Stat., 2025

2021

Multicellular spatial model of RNA virus replication and interferon responses reveals factors controlling plaque growth dynamics.

Josua Aponte-Serrano, Jordan J. A. Weaver, T. J. Sego, James A. Glazier, Jason E. Shoemaker

PLoS Comput. Biol., 2021

DeltaNeTS+: elucidating the mechanism of drugs and diseases using gene expression and transcriptional regulatory networks.

Heeju Noh, Ziyi Hua, Panagiotis Chrysinas, Jason E. Shoemaker, Rudiyanto Gunawan

BMC Bioinform., 2021

Agent-based modeling reveals benefits of heterogeneous and stochastic cell populations during cGAS-mediated IFNβ production.

Robert W. Gregg, Fathima Shabnam, Jason E. Shoemaker

Bioinform., 2021

2019

A dual controllability analysis of influenza virus-host protein-protein interaction networks for antiviral drug target discovery.

Emily E. Ackerman, John F. Alcorn, Takeshi Hase, Jason E. Shoemaker

BMC Bioinform., 2019

2013

Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions.

Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro

PLoS Comput. Biol., 2013

A comprehensive map of the influenza A virus replication cycle.

Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka

BMC Syst. Biol., 2013

2012

Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs.

Jason E. Shoemaker, Satoshi Fukuyama, Amie J. Eisfeld, Yukiko Muramoto, Shinji Watanabe, Tokiko Watanabe, Yukiko Matsuoka, Hiroaki Kitano, Yoshihiro Kawaoka

BMC Syst. Biol., 2012

2011

Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases.

Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano

Bioinform., 2011

2010

Fathead minnow steroidogenesis: in silico analyses reveals tradeoffs between nominal target efficacy and robustness to cross-talk.

Jason E. Shoemaker, Kalyan Gayen, Natàlia Garcia-Reyero, Edward J. Perkins, Daniel L. Villeneuve, Li Liu, Francis J. Doyle

BMC Syst. Biol., 2010

Confidence from uncertainty - A multi-target drug screening method from robust control theory.

Camilla Luni, Jason E. Shoemaker, Kevin R. Sanft, Linda R. Petzold, Francis J. Doyle III

BMC Syst. Biol., 2010

2009

Automatic Control in Systems Biology.

Henry Mirsky, Jörg Stelling, Rudiyanto Gunawan, Neda Bagheri, Stephanie R. Taylor, Eric Kwei, Jason E. Shoemaker, Francis J. Doyle III

Proceedings of the Springer Handbook of Automation, 2009