Etienne Z. Gnimpieba

According to our database, Etienne Z. Gnimpieba authored at least 56 papers between 2013 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

AIMBio-Mat: An AI-Native FAIR Platform for Closed-Loop Materials Discovery and Biomedical Translation.

D.-M. Mei, K. Acharya, C. M. Adhikari, M. Adhikari, S. Aryal, B. V. Benson, K. Bhatta, S. Bhattarai, N. Budhathoki, A. M. Castillo, D. Chakraborty, S. Chhetri, S. Choudhury, T. A. Chowdhury, R. D. Cruz, B. Cui, S. Dhital, K.-M. Dong, R. Gapuz, A. Ghasemi, Etienne Z. Gnimpieba, Bichar Dip Shrestha Gurung, H. A. Hashim, R. I. Harry, K.-E. Hasin, M. K. Hassanzadeh, M. K. Jha, D. Kim, K.-C. Kong, B. Lama, A. Mahat, Naina Maharjan, A. Majeed, J. Mammo, M. M. Masud, K. S. Moore, A. Nawaz, H. Oli, S. A. Panamaldeniya, L. Pandey, R. Pandey, Z. Peng, A. Prem, M. M. Rana, K. Rana Magar, R. Rizk, C. S. Tadi, L.-W. Wang, Y. Yang, G.-L. Yin, C.-X. Yu, D. Zeng, M. Zhou, Q. Zhou

CoRR, May, 2026

2025

Digital Biomonitoring of Microbial Communities: a Phenotype Feature-driven AutoML Framework for Bacteria Classification.

Rupesh Kumar Yadav, Shiva Aryal, Bichar Dip Shrestha Gurung, Dikshya Bhandari, Graham Hartman, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

A Physics-First, Physics-Gated AI Framework for Verifiable Biofilm Sensing.

Caine K. Shagla, Manoj Tripathi, Bichar Dip Shrestha Gurung, Etienne Gnimpieba Zohim, Venkataramana Gadhamshetty

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Emerging Biofilm Marker with Thin-Film (CuO) Surface Engineering for Applications in Electrochemical Sensors.

Pawan Kumar Sapkota, Shiva Aryal, Bharat Jasthi, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Computational Validation of AlphaFold 3 as a Design Engine for Next Generation Aptamer Therapeutics.

Manish Rayamajhi, Shiva Aryal, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

AI-Driven Sensor-Omics Framework for Detecting Antibiotic Resistance in Environmental Engineering Systems.

Somayeh Falahati Khanaman, Etienne Z. Gnimpieba, Mengistu Geza Nisrani, Venkataramana Gadhamshetty

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Development and OMICs Evaluation of Antibiofilm Material Using Hexanoic-Anhydride Modified Chitosan Electrospun Fibers Embedded with Silver Nanoparticles for Antibacterial Effects.

Tippabattini Jayaramudu, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Toward Autonomous Biofilm Engineering: A Vision for a Digital Twin-Based Lab Automation.

Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Digital Twin Forecasting of Quorum-Sensing Associated Biofilm Microorganisms in Urban Wastewater Over a 30-Week Interval.

Bichar Dip Shrestha Gurung, Tuyen Do, Shiva Aryal, Naina Maharjan, Dikshya Bhandari, Bipul Bhattarai, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Functional Biofilm-Associated Microbial Markers in a Colorectal Cancer Cohort: Evidence for Quorum Sensing, Exopolysaccharide Production, and Biofilm-Driven Pathogenesis.

Grace Goeden, Tuyen Do, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Digital Twin COVID Tracker Using Wastewater Data: A Middle-School Led Study Within the U.S. NSF National Research Traineeship Program Framework.

Isha Srikari Gadhamshetty, Jeanne Gnimpieba, Neha Sriveda Gadhamshetty, Shiva Aryal, Arun Kalaga, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

A Convergence Roadmap for AI-Enabled, Omics-Guided Living-Interface Engineering. A National Science Foundation (NSF) National Research Traineeship (NRT) Initiative.

Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Metagenomic Functional Signatures for Real-Time Predictive Monitoring of Cyanobacterial Bloom Assessment and Biofilm Marker Discovery in Managed Freshwater Systems.

Tuyen Do, Naina Maharjan, Connor Johansen-Sallee, Bichar Dip Shrestha Gurung, Paula Mazzer, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Heterogeneous Graph Network (HGN) for Binary Spatio-Chemical-Source Classification of Per- and Polyfluoroalkyl Substances (PFAS) Contamination: An Optimized Approach.

Alain Bertrand Bomgni, Wilfried Loic Dnjomou Yonmba, Ribot Fleury Téné Ceskoutsé, Nick Klein, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Dual-Level Bayesian Predictive Modeling of Biological Nitrogen Fixation: The Effect of TPE Bayesian Optimization on Stacked Model Performance.

Alain Bertrand Bomgni, Dilane Sagueu Wakam, Ribot Fleury Téné Ceskoutsé, Nick Klein, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

Dimensional Reprojection and Sequential Modeling with Transformer Integration for Interesting Gene and Protein Recognition.

Alain Bertrand Bomgni, Feuzing Ntemma Donald, Shiva Aryal, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2025

2024

Biofilm marker discovery with cloud-based dockerized metagenomics analysis of microbial communities.

Etienne Z. Gnimpieba, Timothy W. Hartman, Tuyen Do, Jessica Zylla, Shiva Aryal, Samuel J. Haas, Diing D. M. Agany, Bichar Dip Shrestha Gurung, Valena Doe, Zelaikha B. Yosufzai, Daniel Pan, Ross Campbell, Victor C. Huber, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Carol Lushbough

Briefings Bioinform., July, 2024

HeteroKGRep: Heterogeneous Knowledge Graph based Drug Repositioning.

Ribot Fleury T. Ceskoutsé, Alain Bertrand Bomgni, David R. Gnimpieba Zanfack, Diing D. M. Agany, Thomas Bouétou Bouétou, Etienne Gnimpieba Zohim

Knowl. Based Syst., 2024

Leveraging Multi-AI Agents for Cross-Domain Knowledge Discovery.

Shiva Aryal, Tuyen Do, Bisesh Heyojoo, Sandeep Chataut, Bichar Dip Shrestha Gurung, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

CoRR, 2024

Comparative Study of Domain Driven Terms Extraction Using Large Language Models.

Sandeep Chataut, Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Carol Lushbough, Etienne Z. Gnimpieba

CoRR, 2024

Sub-clustering based recommendation system for stroke patient: Identification of a specific drug class for a given patient.

Ribot Fleury T. Ceskoutsé, Alain Bertrand Bomgni, David R. Gnimpieba Zanfack, Diing D. M. Agany, Thomas Bouétou Bouétou, Etienne Gnimpieba Zohim

Comput. Biol. Medicine, 2024

Applying the DeepSeqDock Harmonization Framework on Pseudomonas Aeruginosa Bacterial Biofilm Data.

Corey Zhao, Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Mariah M. Hoffman, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Enhancing Sulphate Reducing Bacteria Clustering by Implementing UMAP on Raman Spectroscopy Data.

Md Hasanur Rahman, Bichar Dip Shrestha Gurung, Manoj Tripathi, Alan Dalton, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Efficient Prediction of Protein-Ligand Binding Using ESM-2 and Mol2vec with Random Forest Model.

Bichar Dip Shrestha Gurung, Manish Rayamajhi, Anushuya Baidya, Owen Growney, Helena Naomie Dongmo Mafo, Yun-Seok Choi, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

NFB-Checker: An AI/ML-Powered Microorganism Nitrogen Fixation Susceptibility Prediction from Gene Collection.

Tuyen Do, Shiva Aryal, Bichar Dip Shrestha Gurung, Diing D. M. Agany, Nick Klein, Ruanbao Zhou, Rajesh Kumar Sani, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

AIM-HKR: AI-Driven Molecular Retrosynthesis Using Heterogeneous Knowledge Representations.

Alain Bertrand Bomgni, Ribot Fleury Téné Ceskoutsé, Kevin Jordan Njike Njingang, Thomas Bouétou Bouétou, Venkataramana Gadhamshetty, Etienne Gnimpieba Zohim

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

Toward Fine-Tuning Large Language Models in Ontology of Microbial Phenotypes Construction.

Anushuya Baidya, Tuyen Do, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

2023

MultiHop optimal time complexity clustering for emerging IoT applications.

Yann Brice Chebu Mtopi, Alain Bertrand Bomgni, Hafiz Munsub Ali, David R. Gnimpieba Zanfack, Waleed Ejaz, Clémentin Tayou Djamégni, Etienne Zohim Gnimpieba

Clust. Comput., April, 2023

ESPINA: efficient and secured protocol for emerging IoT network applications.

Alain Bertrand Bomgni, Garrik Brel Jagho Mdemaya, Hafiz Munsub Ali, David R. Gnimpieba Zanfack, Etienne Z. Gnimpieba

Clust. Comput., February, 2023

Genome wide computational prediction and analysis of noncoding genome of corrosive biofilm forming Oleidesulfovibrio alaskensis G20.

Ram Nageena Singh, Etienne Z. Gnimpieba, Rajesh Kumar Sani

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning.

Sam Haas, Bichar Dip Shrestha Gurung, Timothy W. Hartman, Tuyen Do, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Transformer in Microbial Image Analysis: A Comparative Exploration of TransUNet, UNet, and DoubleUNet for SEM Image Segmentation.

Bichar Dip Shrestha Gurung, Anup Khanal, Timothy W. Hartman, Tuyen Do, Sandeep Chataut, Carol Lushbough, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Utilizing XGBoost for the Prediction of Material Corrosion Rates from Embedded Tabular Data using Large Language Model.

Tuyen Do, Bichar Dip Shrestha Gurung, Shiva Aryal, Anup Khanal, Sandeep Chataut, Venkataramana Gadhamshetty, Carol Lushbough, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Computational methods for biofouling and corrosion-resistant graphene nanocomposites. A transdisciplinary approach.

Ramesh Devadig, Bichar Dip Shrestha Gurung, Etienne Z. Gnimpieba, Bharat Jasthi, Venkataramana Gadhamshetty

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

NLPADADE: Leveraging Natural Language Processing for Automated Detection of Adverse Drug Effects.

Alain Bertrand Bomgni, Claude Epiphanie Mbotchack Ngale, Shiva Aryal, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough.

Alain Bertrand Bomgni, Dialo Abdala, Bichar Dip Shrestha Gurung, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022

Title: Challenges in single cells sequencing Microbial community and biofilm: A case of Oleidesulfovibrio alaskensis G20 NGS protocol.

Ram Nageena Singh, Etienne Z. Gnimpieba, Rajesh Kumar Sani

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Using BASIN-ML for Machine Learning-Based Statistical Analysis and Reporting for Biofilm Datasets.

Sam Haas, Timothy W. Hartman, Bichar Dip Shrestha Gurung, Tuyen Do, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

U-Net Based Image Segmentation Techniques for Development of Non-Biocidal Fouling-Resistant Ultra-Thin Two-dimensional (2D) Coatings.

Bichar Dip Shrestha Gurung, Ramesh Devadig, Tuyen Do, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Attention model-based and multi-organism driven gene recognition from text: application to a microbial biofilm organism set.

Alain Bertrand Bomgni, Ernest Basile Fotseu Fotseu, Daril Raoul Kengne Wambo, Rajesh Kumar Sani, Carol Lushbough, Etienne Z. Gnimpieba

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Discovery of genes associated with sulfate-reducing bacteria biofilm using text mining and biological network analysis.

Abhilash Kumar Tripathi, Priya Saxena, Payal Thakur, Shailabh Rauniyar, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Identifying genes involved in biocorrosion from the literature using text-mining.

Payal Thakur, Shailabh Rauniyar, Abhilash Kumar Tripathi, Priya Saxena, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Integration of text mining and biological network analysis to access essential genes in Desulfovibrio alaskensis G20.

Priya Saxena, Abhilash Kumar Tripathi, Payal Thakur, Shailabh Rauniyar, Vinoj Gopalakrishnan, Ram Nageena Singh, Mathew A. Olakunle, Etienne Z. Gnimpieba, Rajesh Kumar Sani

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Prediction of essential genes in G20 using machine learning model.

Thierry Kongne Nembot, Ernest Basile Fotseu Fotseu, Rajesh Kumar Sani, Etienne Z. Gnimpieba, Carol Lushbough, Alain Bertrand Bomgni

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Automatic Extension of Medical Subject Headings (MeSH) Thesaurus to Emerging Research.

William Gasper, Jiahao Ma, Dario Ghersi, Etienne Z. Gnimpieba, Venkataramana Gadhamshetty, Parvathi Chundi

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

GenNER - A highly scalable and optimal NER method for text-based gene and protein recognition.

Ernest Basile Fotseu Fotseu, Thierry Kongne Nembot, Rajesh Kumar Sani, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba, Alain Bertrand Bomgni

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2017

Bio-TDS: bioscience query tool discovery system.

Etienne Z. Gnimpieba, Menno S. VanDiermen, Shayla M. Gustafson, Bill Conn, Carol M. Lushbough

Nucleic Acids Res., 2017

NanoStringBioNet: Integrated R framework for bioscience knowledge discovery from NanoString nCounter data.

Mariah M. Hoffman, Carrie J. Minette, Shanta M. Messerli, Ratan D. Bhardwaj, Etienne Z. Gnimpieba

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2015

Life science data analysis workflow development using the bioextract server leveraging the iPlant collaborative cyberinfrastructure.

Carol M. Lushbough, Etienne Z. Gnimpieba, Rion Dooley

Concurr. Comput. Pract. Exp., 2015

SBMLDock: Docker Driven Systems Biology Tool Development and Usage.

Etienne Z. Gnimpieba, Mathialakan Thavappiragasam, Abalo Chango, Bill Conn, Carol M. Lushbough

Proceedings of the Computational Methods in Systems Biology, 2015

2014

Pheno2GRN: a workflow for phenotype to gene network study and reverse engineering comparison.

Nick Weinandt, Laura M. Jackson, Etienne Z. Gnimpieba, Carol Lushbough

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Automatic biosystems comparison using semantic and name similarity.

Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Heuristic parallelizable algorithm for similarity based biosystems comparison.

Mathialakan Thavappiragasam, Carol M. Lushbough, Etienne Z. Gnimpieba

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

RNA-seq gene and transcript expression analysis using the BioExtract server and iPlant collaborative.

Etienne Z. Gnimpieba, Abalo Chango, Carol M. Lushbough

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013

Bioinformatics Knowledge Transmission (training, learning, and teaching): overview and flexible comparison of computer based training approaches.

Etienne Z. Gnimpieba, Douglas M. Jennewein, Luke Fuhrman, Carol Lushbough

CoRR, 2013

BioExtract Server, a Web-based workflow enabling system, leveraging iPlant collaborative resources.

Carol Lushbough, Etienne Z. Gnimpieba, Rion Dooley

Proceedings of the 2013 IEEE International Conference on Cluster Computing, 2013