François Coste

According to our database, François Coste authored at least 27 papers between 1998 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Predicting enzymatic function of protein sequences with attention.

Nicolas Buton, François Coste, Yann Le Cunff

Bioinform., October, 2023

Phylogenetic inference of the emergence of sequence modules and protein-protein interactions in the ADAMTS-TSL family.

Olivier Dennler, François Coste, Samuel Blanquart, Catherine Belleannée, Nathalie Théret

PLoS Comput. Biol., 2023

2021

PPalign: optimal alignment of Potts models representing proteins with direct coupling information.

Hugo Talibart, François Coste

BMC Bioinform., 2021

2019

Deep learning languages: a key fundamental shift from probabilities to weights?

François Coste

CoRR, 2019

2018

Estimating probabilistic context-free grammars for proteins using contact map constraints.

Witold Dyrka, François Coste, Juliette Talibart

CoRR, 2018

How to measure the topological quality of protein parse trees?

Mateusz Pyzik, François Coste, Witold Dyrka

Proceedings of the 14th International Conference on Grammatical Inference, 2018

Learning local substitutable context-free languages from positive examples in polynomial time and data by reduction.

François Coste, Jacques Nicolas

Proceedings of the 14th International Conference on Grammatical Inference, 2018

2016

How to measure the topological quality of protein grammars?

Witold Dyrka, François Coste, Olgierd Unold, Lukasz Culer, Agnieszka Kaczmarek

CoRR, 2016

VIRALpro: a tool to identify viral capsid and tail sequences.

Clovis Galiez, Christophe N. Magnan, François Coste, Pierre Baldi

Bioinform., 2016

2015

Amplitude spectrum distance: measuring the global shape divergence of protein fragments.

Clovis Galiez, François Coste

BMC Bioinform., 2015

2014

A bottom-up efficient algorithm learning substitutable languages from positive examples.

François Coste, Gaëlle Garet, Jacques Nicolas

Proceedings of the 12th International Conference on Grammatical Inference, 2014

Automated Enzyme Classification by Formal Concept Analysis.

François Coste, Gaëlle Garet, Agnès Groisillier, Jacques Nicolas, Thierry Tonon

Proceedings of the Formal Concept Analysis - 12th International Conference, 2014

2013

CyanoLyase: a database of phycobilin lyase sequences, motifs and functions.

Anthony Bretaudeau, François Coste, Florian Humily, Laurence Garczarek, Gildas Le Corguillé, Christophe Six, Morgane Ratin, Olivier Collin, Wendy M. Schluchter, Frédéric Partensky

Nucleic Acids Res., 2013

2012

Locally Substitutable Languages for Enhanced Inductive Leaps.

François Coste, Gaëlle Garet, Jacques Nicolas

Proceedings of the Eleventh International Conference on Grammatical Inference, 2012

Searching for smallest grammars on large sequences and application to DNA.

Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López

J. Discrete Algorithms, 2012

2011

The Smallest Grammar Problem as Constituents Choice and Minimal Grammar Parsing.

Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López

Algorithms, 2011

2010

Choosing Word Occurrences for the Smallest Grammar Problem.

Rafael Carrascosa, François Coste, Matthias Gallé, Gabriel G. Infante López

Proceedings of the Language and Automata Theory and Applications, 2010

2009

In-Place Update of Suffix Array while Recoding Words.

Matthias Gallé, Pierre Peterlongo, François Coste

Int. J. Found. Comput. Sci., 2009

2005

Progressing the state-of-the-art in grammatical inference by competition: The Omphalos Context-Free Language Learning Competition.

Bradford Starkie, François Coste, Menno van Zaanen

AI Commun., 2005

A Similar Fragments Merging Approach to Learn Automata on Proteins.

François Coste, Goulven Kerbellec

Proceedings of the Machine Learning: ECML 2005, 2005

2004

The Omphalos Context-Free Grammar Learning Competition.

Bradford Starkie, François Coste, Menno van Zaanen

Proceedings of the Grammatical Inference: Algorithms and Applications, 2004

Introducing Domain and Typing Bias in Automata Inference.

François Coste, Daniel Fredouille, Christopher Kermorvant, Colin de la Higuera

Proceedings of the Grammatical Inference: Algorithms and Applications, 2004

Mutually Compatible and Incompatible Merges for the Search of the Smallest Consistent DFA.

John Abela, François Coste, Sandro Spina

Proceedings of the Grammatical Inference: Algorithms and Applications, 2004

2003

Unambiguous Automata Inference by Means of State-Merging Methods.

François Coste, Daniel Fredouille

Proceedings of the Machine Learning: ECML 2003, 2003

2000

Efficient Ambiguity Detection in C-NFA, a Step Towards the Inference on Non Deterministic Automata.

François Coste, Daniel Fredouille

Proceedings of the Grammatical Inference: Algorithms and Applications, 2000

1998

How Considering Incompatible State Mergings May Reduce the DFA Induction Search Tree.

François Coste, Jacques Nicolas

Proceedings of the Grammatical Inference, 4th International Colloquium, 1998

Inference of Finite Automata: Reducing the Search Space with an Ordering of Pairs of States.

François Coste, Jacques Nicolas

Proceedings of the Machine Learning: ECML-98, 1998