Olivier Collin

According to our database, Olivier Collin authored at least 21 papers between 1999 and 2019.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2019

The ReproGenomics Viewer: a multi-omics and cross-species resource compatible with single-cell studies for the reproductive science community.

Thomas A. Darde, Estelle Lecluze, Aurélie Lardenois, Isabelle Stévant, Nathan Alary, Frank Tüttelmann, Olivier Collin, Serge Nef, Bernard Jégou, Antoine D. Rolland, Frédéric Chalmel

Bioinform., 2019

2018

TOXsIgN: a cross-species repository for toxicogenomic signatures.

Thomas A. Darde, Pierre Gaudriault, Rémi Beranger, Clément Lancien, Annaëlle Caillarec-Joly, Olivier Sallou, Nathalie Bonvallot, Cécile Chevrier, Séverine Mazaud-Guittot, Bernard Jégou, Olivier Collin, Emmanuelle Becker, Antoine D. Rolland, Frédéric Chalmel

Bioinform., 2018

2017

Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities.

Sarah Cohen Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet

Future Gener. Comput. Syst., 2017

2016

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows.

Olivier Sallou, Paula D. Duek, Thomas A. Darde, Olivier Collin, Lydie Lane, Frédéric Chalmel

Database J. Biol. Databases Curation, 2016

2015

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Damian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, James E. Allen, Olivier Arnaiz, Mohammad Hamza Awedh, Richard A. Baldock, Giulia Barbiera, Philippe Bardou, Tim Beck, Andrew Blake, Merideth Bonierbale, Anthony J. Brookes, Gabriele Bucci, Iwan Buetti, Sarah W. Burge, Cédric Cabau, Joseph W. Carlson, Claude Chelala, Charalambos Chrysostomou, Davide Cittaro, Olivier Collin, Raul Cordova, Rosalind J. Cutts, Erik Dassi, Alex Di Génova, Anis Djari, Anthony Esposito, Heather Estrella, Eduardo Eyras, Julio Fernandez-Banet, Simon A. Forbes, Robert C. Free, Takatomo Fujisawa, Emanuela Gadaleta, Jose M. Garcia-Manteiga, David M. Goodstein, Kristian A. Gray, José Afonso Guerra-Assunção, Bernard Haggarty, Dongjin Han, Byungwoo Han, Todd W. Harris, Jayson Harshbarger, Robert K. Hastings, Richard D. Hayes, Claire Hoede, Shen Hu, Zhi-Liang Hu, Lucie N. Hutchins, Zhengyan Kan, Hideya Kawaji, Aminah-Olivia Keliet, Arnaud Kerhornou, Sunghoon Kim, Rhoda Kinsella, Christophe Klopp, Lei Kong, Daniel Lawson, Dejan Lazarevic, Ji-Hyun Lee, Thomas Letellier, Chuan-Yun Li, Pietro Liò, Chu-Jun Liu, Jie Luo, Alejandro Maass, Jérôme Mariette, Thomas Maurel, Stefania Merella, Azza Mostafa Mohamed, François Moreews, Nabihoudine Ibouniyamine, Nelson Ndegwa, Céline Noirot, Christian Perez-Llamas, Michael Primig, Alessandro Quattrone, Hadi Quesneville, Davide Rambaldi, James M. Reecy, Michela Riba, Steven Rosanoff, Amna Ali Saddiq, Elisa Salas, Olivier Sallou, Rebecca Shepherd, Reinhard Simon, Linda Sperling, William Spooner, Daniel M. Staines, Delphine Steinbach, Kevin R. Stone, Elia Stupka, Jon W. Teague, Abu Z. Dayem Ullah, Jun Wang, Doreen Ware, Marie Wong-Erasmus, Ken Youens-Clark, Amonida Zadissa, Shi-Jian Zhang, Arek Kasprzyk

Nucleic Acids Res., 2015

The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community.

Thomas A. Darde, Olivier Sallou, Emmanuelle Becker, Bertrand Evrard, Cyril Monjeaud, Yvan Le Bras, Bernard Jégou, Olivier Collin, Antoine D. Rolland, Frédéric Chalmel

Nucleic Acids Res., 2015

BioShaDock: a community driven bioinformatics shared Docker-based tools registry.

François Moreews, Olivier Sallou, Hervé Ménager, Yvan Le Bras, Cyril Monjeaud, Christophe Blanchet, Olivier Collin

F1000Research, 2015

Classification d'entités nommées de type film.

Olivier Collin, Aleksandra Guerraz

Proceedings of the Actes de la 22e conference sur le Traitement Automatique des Langues Naturelles. Articles courts, 2015

2013

CyanoLyase: a database of phycobilin lyase sequences, motifs and functions.

Anthony Bretaudeau, François Coste, Florian Humily, Laurence Garczarek, Gildas Le Corguillé, Christophe Six, Morgane Ratin, Olivier Collin, Wendy M. Schluchter, Frédéric Partensky

Nucleic Acids Res., 2013

2012

GPSy: a cross-species gene prioritization system for conserved biological processes - application in male gamete development.

Ramona Britto, Olivier Sallou, Olivier Collin, Grégoire Michaux, Michael Primig, Frédéric Chalmel

Nucleic Acids Res., 2012

2011

Un outil de géolocalisation et de résumé automatique pour faciliter l'accès à l'information dans des corpus d'actualité.

Emilie Guimier De Neef, Aurélien Bossard, Frédéric Gavignet, Olivier Collin

Proceedings of the Extraction et gestion des connaissances (EGC'2011), 2011

2010

GermOnline 4.0 is a genomics gateway for germline development, meiosis and the mitotic cell cycle.

Aurélie Lardenois, Alexandre Gattiker, Olivier Collin, Frédéric Chalmel, Michael Primig

Database J. Biol. Databases Curation, 2010

Traduction de requêtes basée sur Wikipédia.

Benoît Gaillard, Olivier Collin, Malek Boualem

Proceedings of the Actes de la 17e conférence sur le Traitement Automatique des Langues Naturelles. Articles courts, 2010

Constitution d'une ressource sémantique issue du treillis des catégories de Wikipedia.

Olivier Collin, Benoît Gaillard, Jean Léon Bouraoui

Proceedings of the Actes de la 17e conférence sur le Traitement Automatique des Langues Naturelles. Articles courts, 2010

Query translation using Wikipedia-based resources for analysis and disambiguation.

Benoît Gaillard, Malek Boualem, Olivier Collin

Proceedings of the 14th Annual conference of the European Association for Machine Translation, 2010

2009

MIMAS 3.0 is a Multiomics Information Management and Annotation System.

Alexandre Gattiker, Leandro Hermida, Robin Liechti, Ioannis Xenarios, Olivier Collin, Jacques Rougemont, Michael Primig

BMC Bioinform., 2009

2008

BioMAJ: a flexible framework for databanks synchronization and processing.

Olivier Filangi, Yoann Beausse, Anthony Assi, Ludovic Legrand, Jean-Marc Larré, Véronique Martin, Olivier Collin, Christophe Caron, Hugues Leroy, David Allouche

Bioinform., 2008

2006

Acquisition de concepts bilingues à partir du Web.

Olivier Collin, Émmanuelle Pétrier

Proceedings of the Actes de la 13ème conférence sur le Traitement Automatique des Langues Naturelles. Articles longs, 2006

2003

Apprentissage Automatique de Paraphrases pour l'Amélioration d'un Système de Questions-Réponses.

Florence Duclaye, Olivier Collin, François Yvon

Proceedings of the Actes de la 10ème conférence sur le Traitement Automatique des Langues Naturelles. Articles longs, 2003

2002

Using the Web as a Linguistic Resource for Learning Reformulations Automatically.

Florence Duclaye, François Yvon, Olivier Collin

Proceedings of the Third International Conference on Language Resources and Evaluation, 2002

1999

Incremental enrolment of speech recognizers.

Chafic Mokbel, Olivier Collin

Proceedings of the 1999 IEEE International Conference on Acoustics, 1999