Galip Gürkan Yardimci

According to our database, Galip Gürkan Yardimci authored at least 7 papers between 2006 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Capturing cell type-specific chromatin compartment patterns by applying topic modeling to single-cell Hi-C data.

Hyeon-Jin Kim, Galip Gürkan Yardimci, Giancarlo Bonora, Vijay Ramani, Jie Liu, Ruolan Qiu, Choli Lee, Jennifer Hesson, Carol B. Ware, Jay Shendure, Zhi-jun Duan, William Stafford Noble

PLoS Comput. Biol., 2020

2019

Inferring Diploid 3D Chromatin Structures from Hi-C Data.

Alexandra Gesine Cauer, Gürkan Yardimci, Jean-Philippe Vert, Nelle Varoquaux, William Stafford Noble

Proceedings of the 19th International Workshop on Algorithms in Bioinformatics, 2019

2018

GenomeDISCO: a concordance score for chromosome conformation capture experiments using random walks on contact map graphs.

Oana Ursu, Nathan Boley, Maryna Taranova, Y. X. Rachel Wang, Galip Gürkan Yardimci, William Stafford Noble, Anshul Kundaje

Bioinform., 2018

Unsupervised embedding of single-cell Hi-C data.

Jie Liu, Dejun Lin, Galip Gürkan Yardimci, William Stafford Noble

Bioinform., 2018

2017

HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.

Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein

Bioinform., 2017

2015

Predictive model of 3D domain formation via CTCF-mediated extrusion.

Galip Gürkan Yardimci, William Stafford Noble

Proc. Natl. Acad. Sci. USA, 2015

2006

Modified Association Rule Mining Approach for the MHC-Peptide Binding Problem.

Galip Gürkan Yardimci, Alper Küçükural, Yücel Saygin, Osman Ugur Sezerman

Proceedings of the Computer and Information Sciences, 2006