Gary Benson

Proceedings of the Bioinformatics Research and Applications - 13th International Symposium, 2017

2016

LCSk: A refined similarity measure.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2016

Special issue in honor of the 60th birthday of Amihood Amir.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2016

Editorial: Nucleic Acids Research annual Web Server Issue in 2016.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2016

2015

Editorial: Nucleic Acids Research annual Web Server Issue in 2015.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2015

2014

Editorial: <i>Nucleic Acids Research</i> annual Web Server Issue in 2014.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2014

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data.

[BibT_eX]

[DOI]

Allyson L. Byrd

Joseph F. Perez-Rogers

Solaiappan Manimaran

Eduardo Castro-Nallar

BMC Bioinform., 2014

BitPAl: a bit-parallel, general integer-scoring sequence alignment algorithm.

[BibT_eX]

[DOI]

Joshua Loving

Yözen Hernández

Bioinform., 2014

2013

Longest Common Subsequence in k Length Substrings.

[BibT_eX]

[DOI]

Avivit Levy

B. Riva Shalom

Proceedings of the Similarity Search and Applications - 6th International Conference, 2013

A Bit-Parallel, General Integer-Scoring Sequence Alignment Algorithm.

[BibT_eX]

[DOI]

Yözen Hernández

Joshua Loving

Proceedings of the Combinatorial Pattern Matching, 24th Annual Symposium, 2013

2012

Mining poly-regions in DNA.

[BibT_eX]

[DOI]

Panagiotis Papapetrou

George Kollios

Int. J. Data Min. Bioinform., 2012

2010

Editorial.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2010

2009

<i>Nucleic Acids Research</i> annual Web Server Issue in 2009.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2009

Pattern matching with address errors: Rearrangement distances.

[BibT_eX]

[DOI]

J. Comput. Syst. Sci., 2009

All hits all the time: parameter-free calculation of spaced seed sensitivity.

[BibT_eX]

[DOI]

Bioinform., 2009

Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems.

[BibT_eX]

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008

Exact Distribution of a Spaced Seed Statistic for DNA Homology Detection.

[BibT_eX]

[DOI]

Proceedings of the String Processing and Information Retrieval, 2008

2007

Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2007

TRDB - The Tandem Repeats Database.

[BibT_eX]

[DOI]

Yevgeniy Gelfand

Alfredo Rodriguez

Nucleic Acids Res., 2007

3'-UTR SIRF: A database for identifying clusters of short interspersed repeats in 3' untranslated regions.

[BibT_eX]

[DOI]

BMC Bioinform., 2007

Oligonucleotide fingerprint identification for microarray-based pathogen diagnostic assays.

[BibT_eX]

[DOI]

Leonard P. Wasieloski

Jaques Reifman

Bioinform., 2007

Tandem repeats over the edit distance.

[BibT_eX]

[DOI]

Dina Sokol

Justin Tojeira

Bioinform., 2007

All Hits All The Time: Parameter Free Calculation of Seed Sensitivity.

[BibT_eX]

[DOI]

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007

2006

Indel seeds for homology search.

[BibT_eX]

[DOI]

Yevgeniy Gelfand

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Discovering Frequent Poly-Regions in DNA Sequences.

[BibT_eX]

[DOI]

Panagiotis Papapetrou

George Kollios

Proceedings of the Workshops Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

2005

Tandem cyclic alignment.

[BibT_eX]

[DOI]

Discret. Appl. Math., 2005

2003

Composition Alignment.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

2002

A new distance measure for comparing sequence profiles based on path lengths along an entropy surface.

[BibT_eX]

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

1999

Reconstructing the Duplication History of a Tandem Repeat.

[BibT_eX]

[DOI]

Lan Dong

Proceedings of the Seventh International Conference on Intelligent Systems for Molecular Biology, 1999

1998

Two-Dimensional Periodicity in Rectangular Arrays.

[BibT_eX]

[DOI]

SIAM J. Comput., 1998

On the Distribution of K-tuple Matches for Sequence Homology: A Constant Time Exact Calculation of the Variance.

[BibT_eX]

[DOI]

X. Su

J. Comput. Biol., 1998

Optimal Parallel Two Dimensional Text Searching on a CREW PRAM.

[BibT_eX]

[DOI]

Inf. Comput., 1998

An algorithm for finding tandem repeats of unspecified pattern size.

[BibT_eX]

[DOI]

Proceedings of the Second Annual International Conference on Research in Computational Molecular Biology, 1998

1997

Pooling Strategies for Establishing Physical Genome Maps Using FISH.

[BibT_eX]

[DOI]

J. Comput. Biol., 1997

Sequence Alignment with Tandem Duplication.

[BibT_eX]

[DOI]

J. Comput. Biol., 1997

Optimal Two-Dimensional Compressed Matching.

[BibT_eX]

[DOI]

J. Algorithms, 1997

1996

Let Sleeping Files Lie: Pattern Matching in Z-Compressed Files.

[BibT_eX]

[DOI]

J. Comput. Syst. Sci., 1996

1995

A Space Efficient Algorithm for Finding the Best Nonoverlapping Alignment Score.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 1995

1994

An Alphabet Independent Approach to Two-Dimensional Pattern Matching.

[BibT_eX]

[DOI]

SIAM J. Comput., 1994

A Space Efficient Algorithm for Finding the Best Non-Overlapping Alignment Score.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 5th Annual Symposium, 1994

1993

Optimal Parallel Two Dimensional Pattern Matching.

[BibT_eX]

[DOI]

Proceedings of the 5th Annual ACM Symposium on Parallel Algorithms and Architectures, 1993

1992

Alphabet Independent Two Dimensional Matching

[BibT_eX]

[DOI]

Proceedings of the 24th Annual ACM Symposium on Theory of Computing, 1992

Two-Dimensional Periodicity and Its Applications.

[BibT_eX]

[DOI]

Proceedings of the Third Annual ACM/SIGACT-SIAM Symposium on Discrete Algorithms, 1992

Efficient Two-Dimensional Compressed Matching.

[BibT_eX]

[DOI]