Keith A. Crandall

According to our database, Keith A. Crandall authored at least 15 papers between 1998 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Synergies between centralized and federated approaches to data quality: a report from the national COVID cohort collaborative.

Emily R. Pfaff, Andrew T. Girvin, Davera Gabriel, Kristin Kostka, Michele Morris, Matvey B. Palchuk, Harold P. Lehmann, Benjamin R. C. Amor, Mark Bissell, Katie R. Bradwell, Sigfried Gold, Stephanie S. Hong, Johanna Loomba, Amin Manna, Julie A. McMurry, Emily Niehaus, Nabeel Qureshi, Anita Walden, Xiaohan Tanner Zhang, Richard L. Zhu, Richard A. Moffitt, Christopher G. Chute, William G. Adams, Shaymaa Al-Shukri, Alfred Anzalone, Ahmad Baghal, Tellen D. Bennett, Elmer V. Bernstam, Mark M. Bissell, Brian Bush, Thomas R. Campion Jr., Victor Castro, Jack Chang, Deepa D. Chaudhari, Wenjin Chen, San Chu, James J. Cimino, Keith A. Crandall, Mark Crooks, Sara J. Deakyne Davies, John Dipalazzo, David A. Dorr, Dan Eckrich, Sarah E. Eltinge, Daniel G. Fort, George Golovko, Snehil Gupta, Melissa A. Haendel, Janos G. Hajagos, David A. Hanauer, Brett M. Harnett, Ronald Horswell, Nancy Huang, Steven G. Johnson, Michael Kahn, Kamil Khanipov, Curtis Kieler, Katherine Ruiz De Luzuriaga, Sarah E. Maidlow, Ashley Martinez, Jomol Mathew, James C. McClay, Gabriel McMahan, Brian Melancon, Stéphane M. Meystre, Lucio Miele, Hiroki Morizono, Ray Pablo, Lav P. Patel, Jimmy Phuong, Daniel J. Popham, Claudia P. Pulgarin, Carlos Santos, Indra Neil Sarkar, Nancy Sazo, Soko Setoguchi, Selvin Soby, Sirisha Surampalli, Christine Suver, Uma Maheswara Reddy Vangala, Shyam Visweswaran, James von Oehsen, Kellie M. Walters, Laura K. Wiley, David A. Williams, Adrian H. Zai

J. Am. Medical Informatics Assoc., 2022

2021

Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank.

Alexander V. Alekseyenko, Bashir Hamidi, Trevor D. Faith, Keith A. Crandall, Jennifer G. Powers, Christopher Metts, James E. Madory, Steven L. Carroll, Jihad S. Obeid, Leslie A. Lenert

J. Am. Medical Informatics Assoc., 2021

Omics community detection using multi-resolution clustering.

Ali Rahnavard, Suvo Chatterjee, Bahar Sayoldin, Keith A. Crandall, Fasil Tekola-Ayele, Himel Mallick

Bioinform., 2021

COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model.

Nikhita Gogate, Daniel Lyman, Amanda Bell, Edmund Cauley, Keith A. Crandall, Ashia Joseph, Robel Y. Kahsay, Darren A. Natale, Lynn M. Schriml, Sabyasach Sen, Raja Mazumder

Briefings Bioinform., 2021

2020

ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data.

Liam F. Spurr, Nawaf Alomran, Pavlos Bousounis, Dacian Reece-Stremtan, N. M. Prashant, Hongyu Liu, Piotr Slowinski, Muzi Li, Qianqian Zhang, Justin Sein, Gabriel Asher, Keith A. Crandall, Krasimira Tsaneva-Atanasova, Anelia Horvath

Bioinform., 2020

2019

Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression.

Matthew L. Bendall, Miguel de Mulder, Luis Pedro Iñiguez, Aarón Lecanda-Sánchez, Marcos Pérez-Losada, Mario A. Ostrowski, R. Brad Jones, Lubbertus C. F. Mulder, Gustavo Reyes-Terán, Keith A. Crandall, Christopher E. Ormsby, Douglas F. Nixon

PLoS Comput. Biol., 2019

2017

Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs.

Cole A. Lyman, M. Stanley Fujimoto, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction.

M. Stanley Fujimoto, Cole A. Lyman, Anton Suvorov, Paul M. Bodily, Quinn Snell, Keith A. Crandall, Seth M. Bybee, Mark J. Clement

Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017

2014

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.

Daniel I. Speiser, M. Sabrina Pankey, Alexander K. Zaharoff, Barbara A. Battelle, Heather D. Bracken-Grissom, Jesse W. Breinholt, Seth M. Bybee, Thomas W. Cronin, Anders Garm, Annie R. Lindgren, Nipam H. Patel, Megan L. Porter, Meredith E. Protas, Ajna S. Rivera, Jeanne M. Serb, Kirk S. Zigler, Keith A. Crandall, Todd H. Oakley

BMC Bioinform., 2014

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data.

Allyson L. Byrd, Joseph F. Perez-Rogers, Solaiappan Manimaran, Eduardo Castro-Nallar, Ian Toma, Tim McCaffrey, Marc Siegel, Gary Benson, Keith A. Crandall, William Johnson

BMC Bioinform., 2014

2012

Phylogenetic search through partial tree mixing.

Kenneth Sundberg, Mark J. Clement, Quinn Snell, Dan Ventura, Michael Whiting, Keith A. Crandall

BMC Bioinform., 2012

2006

Jumpstarting phylogenetic analysis.

Jesse Mecham, Mark J. Clement, Quinn Snell, Todd Freestone, Kevin D. Seppi, Keith A. Crandall

Int. J. Bioinform. Res. Appl., 2006

2003

TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees.

Steve Woolley, Justin Johnson, Matthew J. Smith, Keith A. Crandall, David A. McClellan

Bioinform., 2003

2002

TCS: Estimating Gene Genealogies.

Mark J. Clement, Quinn Snell, Peter Walker, David Posada, Keith A. Crandall

Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002

1998

MODELTEST: testing the model of DNA substitution.

David Posada, Keith A. Crandall

Bioinform., 1998