Genevieve L. Stein-O'Brien

According to our database, Genevieve L. Stein-O'Brien authored at least 6 papers between 2017 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

BIWT: a bioinformatics walkthrough for embedding spatial multiomics in agent-based models for virtual cells.

Daniel R. Bergman, Jeanette A. I. Johnson, Marwa Naji, Max Booth, Heber L. Rocha, Atul Deshpande, Dimitrios N. Sidiropoulos, Tamara Lopez-Vidal, Randy W. Heiland, Luciane T. Kagohara, Robert A. Anders, Lei Zheng, Elizabeth M. Jaffee, Genevieve L. Stein-O'Brien, Paul Macklin, Elana J. Fertig

Bioinform., 2025

2023

Transcriptomic forecasting with neural ordinary differential equations.

Rossin Erbe, Genevieve L. Stein-O'Brien, Elana J. Fertig

Patterns, August, 2023

2020

projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering.

Gaurav Sharma, Carlo Colantuoni, Loyal A. Goff, Elana J. Fertig, Genevieve L. Stein-O'Brien

Bioinform., 2020

2019

CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer.

Thomas Sherman, Luciane T. Kagohara, Raymon Cao, Raymond Cheng, Matthew Satriano, Michael Considine, Gabriel Krigsfeld, Ruchira Ranaweera, Yong Tang, Sandra A. Jablonski, Genevieve L. Stein-O'Brien, Daria A. Gaykalova, Louis M. Weiner, Christine H. Chung, Elana J. Fertig

PLoS Comput. Biol., 2019

2018

Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.

Bahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig

Bioinform., 2018

2017

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.

Genevieve L. Stein-O'Brien, Jacob L. Carey, Waishing Lee, Michael Considine, Alexander V. Favorov, Emily Flam, Theresa Guo, Sijia Li, Luigi Marchionni, Thomas Sherman, Shawn Sivy, Daria A. Gaykalova, Ronald McKay, Michael F. Ochs, Carlo Colantuoni, Elana J. Fertig

Bioinform., 2017