Paul Macklin

Orcid: 0000-0002-9925-0151

According to our database1, Paul Macklin authored at least 17 papers between 2006 and 2023.

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Bibliography

2023
An agent-based modeling approach for lung fibrosis in response to COVID-19.
PLoS Comput. Biol., December, 2023

Aboveground biomass and carbon stock estimation using UAV photogrammetry in Indonesian mangroves and other competing land uses.
Ecol. Informatics, November, 2023

2022
Building digital twins of the human immune system: toward a roadmap.
npj Digit. Medicine, 2022

Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation.
Frontiers Digit. Health, 2022

OpenACC Acceleration of an Agent-Based Biological Simulation Framework.
Comput. Sci. Eng., 2022

2020
OrgDyn: feature- and model-based characterization of spatial and temporal organoid dynamics.
Bioinform., 2020

2019
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program.
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Nat., 2019

xml2jupyter: Mapping parameters between XML and Jupyter widgets.
J. Open Source Softw., 2019

PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling.
Bioinform., 2019

Students' Use of Metacognitive Skills in Undergraduate Research Experiences in Computational Modeling.
Proceedings of the IEEE Frontiers in Education Conference, 2019

2018
PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems.
PLoS Comput. Biol., 2018

High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow.
BMC Bioinform., 2018

2016
An Evolutionary Model of Tumor Cell Kinetics and the Emergence of Molecular Heterogeneity Driving Gompertzian Growth.
SIAM Rev., 2016

Quantifying differences in cell line population dynamics using CellPD.
BMC Syst. Biol., 2016

BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.
Bioinform., 2016

2008
A New Ghost Cell/Level Set Method for Moving Boundary Problems: Application to Tumor Growth.
J. Sci. Comput., 2008

2006
An improved geometry-aware curvature discretization for level set methods: Application to tumor growth.
J. Comput. Phys., 2006


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