Gürkan Bebek

According to our database, Gürkan Bebek authored at least 17 papers between 2005 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2021

Frequent Subgraph Mining of Functional Interaction Patterns Across Multiple Cancers.

Arda Durmaz, Tim A. D. Henderson, Gürkan Bebek

Proceedings of the Biocomputing 2021: Proceedings of the Pacific Symposium, 2021

2017

Frequent Subgraph Mining of Personalized Signaling Pathway Networks Groups Patients with Frequently Dysregulated Disease Pathways and Predicts Prognosis.

Arda Durmaz, Tim A. D. Henderson, Douglas Brubaker, Gürkan Bebek

Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

2014

Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance.

Douglas Brubaker, Analisa Difeo, Yanwen Chen, Taylor Pearl, Kaide Zhai, Gürkan Bebek, Mark R. Chance, Jill S. Barnholtz-Sloan

Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014

2013

Session introduction.

Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

2012

MAGNET: MicroArray Gene expression and Network Evaluation Toolkit.

George C. Linderman, Mark R. Chance, Gürkan Bebek

Nucleic Acids Res., 2012

Network biology methods integrating biological data for translational science.

Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance

Briefings Bioinform., 2012

2011

Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma.

Gürkan Bebek, Mohammed Orloff, Charis Eng

J. Clin. Bioinform., 2011

Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks.

Sinan Erten, Gürkan Bebek, Mehmet Koyutürk

J. Comput. Biol., 2011

BiC: a web server for calculating bimodality of coexpression between gene and protein networks.

George C. Linderman, Vishal N. Patel, Mark R. Chance, Gürkan Bebek

Bioinform., 2011

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization.

Sinan Erten, Gürkan Bebek, Rob M. Ewing, Mehmet Koyutürk

BioData Min., 2011

Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks.

Sinan Erten, Gürkan Bebek, Mehmet Koyutürk

Proceedings of the Research in Computational Molecular Biology, 2011

Session Introduction.

Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price

Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010

PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling.

Gürkan Bebek, Vishal N. Patel, Mark R. Chance

BMC Bioinform., 2010

2009

Phylogenetic analysis of modularity in protein interaction networks.

Sinan Erten, Xin Li, Gürkan Bebek, Jing Li, Mehmet Koyutürk

BMC Bioinform., 2009

2007

PathFinder: mining signal transduction pathway segments from protein-protein interaction networks.

Gürkan Bebek, Jiong Yang

BMC Bioinform., 2007

2006

The degree distribution of the generalized duplication model.

Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp

Theor. Comput. Sci., 2006

2005

Improved Duplication Models for Proteome Network Evolution.

Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp

Proceedings of the Systems Biology and Regulatory Genomics, 2005