Thomas LaFramboise

According to our database, Thomas LaFramboise authored at least 16 papers between 2004 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

SYSMut: decoding the functional significance of rare somatic mutations in cancer.

Sirvan Khalighi, Peronne Joseph, Deepak Babu, Salendra Singh, Thomas LaFramboise, Kishore Guda, Vinay Varadan

Briefings Bioinform., 2022

2019

CytoConverter: a web-based tool to convert karyotypes to genomic coordinates.

Janet Wang, Thomas LaFramboise

BMC Bioinform., 2019

2017

Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer.

M. Khalid Khan Niazi, Keluo Yao, Debra L. Zynger, Steven K. Clinton, James Chen, Mehmet Koyutürk, Thomas LaFramboise, Metin N. Gurcan

IEEE J. Biomed. Health Informatics, 2017

Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree.

Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Detection and quantification of mitochondrial DNA deletions from next-generation sequence data.

Colleen M. Bosworth, Sneha Grandhi, Meetha P. Gould, Thomas LaFramboise

BMC Bioinform., 2017

2015

Whole-exome sequencing enhances prognostic classification of myeloid malignancies.

Matthew Ruffalo, Holleh Husseinzadeh, Hideki Makishima, Bartlomiej Przychodzen, Mohamed Ashkar, Mehmet Koyutürk, Jaroslaw P. Maciejewski, Thomas LaFramboise

J. Biomed. Informatics, 2015

2013

Session introduction.

Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance

Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error.

Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk

Proceedings of the ACM Conference on Bioinformatics, 2013

2012

Accurate estimation of short read mapping quality for next-generation genome sequencing.

Matthew Ruffalo, Mehmet Koyutürk, Soumya Ray, Thomas LaFramboise

Bioinform., 2012

2011

Comparative analysis of algorithms for next-generation sequencing read alignment.

Matthew Ruffalo, Thomas LaFramboise, Mehmet Koyutürk

Bioinform., 2011

2010

Power to detect selective allelic amplification in genome-wide scans of tumor data.

Ninad Dewal, Matthew L. Freedman, Thomas LaFramboise, Itsik Pe'er

Bioinform., 2010

COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays.

Gökhan Yavas, Mehmet Koyutürk, Z. Meral Özsoyoglu, Meetha P. Gould, Thomas LaFramboise

Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations.

Gökhan Yavas, Mehmet Koyutürk, Thomas LaFramboise

Proceedings of the Pattern Recognition in Bioinformatics, 2010

2009

A flexible rank-based framework for detecting copy number aberrations from array data.

Thomas LaFramboise, Wendy Winckler, Roman K. Thomas

Bioinform., 2009

2005

Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis.

Thomas LaFramboise, Barbara A. Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li, David Harrington, William R. Sellers, Matthew Meyerson

PLoS Comput. Biol., 2005

2004

A graph-theoretic approach to testing associations between disparate sources of functional genomics data.

Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman

Bioinform., 2004