Mehmet Koyutürk

According to our database1, Mehmet Koyutürk authored at least 73 papers between 2002 and 2018.

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Bibliography

2018
Querying of Disparate Association and Interaction Data in Biomedical Applications.
IEEE/ACM Trans. Comput. Biology Bioinform., 2018

Indexed Fast Network Proximity Querying.
PVLDB, 2018

Cross-Population Analysis for Functional Characterization of Type II Diabetes Variants.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer.
IEEE J. Biomedical and Health Informatics, 2017

Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree.
IEEE/ACM Trans. Comput. Biology Bioinform., 2017

Effects of emotion and topic area on topic shifts in social media discussions.
Social Netw. Analys. Mining, 2017

The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics.
Bioinformatics, 2017

Linearity of network proximity measures: implications for set-based queries and significance testing.
Bioinformatics, 2017

Network Map of Adverse Health Effects Among Victims of Intimate Partner Violence.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Drug Response Prediction as a Link Prediction Problem.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017

2016
PoCos: Population Covering Locus Sets for Risk Assessment in Complex Diseases.
PLoS Computational Biology, 2016

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model.
BMC Bioinformatics, 2016

Efficient Processing of Network Proximity Queries via Chebyshev Acceleration.
Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2016

MoBaS on Phosphorylation Data.
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016

Emotion -and area-driven topic shift analysis in social media discussions.
Proceedings of the 2016 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2016

2015
Network-Based Integration of Disparate Omic Data To Identify "Silent Players" in Cancer.
PLoS Computational Biology, 2015

Whole-exome sequencing enhances prognostic classification of myeloid malignancies.
Journal of Biomedical Informatics, 2015

MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring.
EURASIP J. Bioinformatics and Systems Biology, 2015

Link Prediction in Large Networks by Comparing the Global View of Nodes in the Network.
Proceedings of the IEEE International Conference on Data Mining Workshop, 2015

Integrated querying of disparate association and interaction data in biomedical applications.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

Assessing the collective disease association of multiple genomic loci.
Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014
What Do We Learn from Network-Based Analysis of Genome-Wide Association Data?
Proceedings of the Applications of Evolutionary Computation - 17th European Conference, 2014

Prioritization of genomic locus pairs for testing epistasis.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network.
Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

2013
Network Signatures of Survival in Glioblastoma Multiforme.
PLoS Computational Biology, 2013

Session introduction.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks.
I. J. Computational Biology and Drug Design, 2012

Using Protein Interaction Networks to Understand Complex Diseases.
IEEE Computer, 2012

Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data.
BMC Systems Biology, 2012

Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases.
BMC Systems Biology, 2012

Accurate estimation of short read mapping quality for next-generation genome sequencing.
Bioinformatics, 2012

Network biology methods integrating biological data for translational science.
Briefings in Bioinformatics, 2012

Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks.
Journal of Computational Biology, 2011

Subnetwork State Functions Define Dysregulated Subnetworks in Cancer.
Journal of Computational Biology, 2011

Comparative analysis of algorithms for next-generation sequencing read alignment.
Bioinformatics, 2011

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization.
BioData Mining, 2011

Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks.
Proceedings of the Research in Computational Molecular Biology, 2011

Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

Session Introduction.
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011

2010
Weighted Matrix Ordering and Parallel Banded Preconditioners for Iterative Linear System Solvers.
SIAM J. Scientific Computing, 2010

An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer.
PLoS Computational Biology, 2010

Functional characterization and topological modularity of molecular interaction networks.
BMC Bioinformatics, 2010

Subnetwork State Functions Define Dysregulated Subnetworks in Cancer.
Proceedings of the Research in Computational Molecular Biology, 2010

COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Identification of Coordinately Dysregulated Subnetworks in Complex Phenotypes.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations.
Proceedings of the Pattern Recognition in Bioinformatics, 2010

Role of Centrality in Network-Based Prioritization of Disease Genes.
Proceedings of the Evolutionary Computation, 2010

2009
Efficient tag detection in RFID systems.
J. Parallel Distrib. Comput., 2009

Phylogenetic analysis of modularity in protein interaction networks.
BMC Bioinformatics, 2009

2008
Semantic indexing in structured peer-to-peer networks.
J. Parallel Distrib. Comput., 2008

PHALANX: a graph-theoretic framework for test case prioritization.
Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), 2008

Annotating Pathways of Interaction Networks.
Proceedings of the Biocomputing 2008, 2008

Functional coherence in domain interaction networks.
Proceedings of the ECCB'08 Proceedings, 2008

2007
Assessing Significance of Connectivity and Conservation in Protein Interaction Networks.
Journal of Computational Biology, 2007

Functional annotation of regulatory pathways.
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006
Nonorthogonal decomposition of binary matrices for bounded-error data compression and analysis.
ACM Trans. Math. Softw., 2006

Pairwise Alignment of Protein Interaction Networks.
Journal of Computational Biology, 2006

Detecting Conserved Interaction Patterns in Biological Networks.
Journal of Computational Biology, 2006

Inferring functional information from domain co-evolution.
Bioinformatics, 2006

CONQUEST: A Coarse-Grained Algorithm for Constructing Summaries of Distributed Discrete Datasets.
Algorithmica, 2006

Assessing Significance of Connectivity and Conservation in Protein Interaction Networks.
Proceedings of the Research in Computational Molecular Biology, 2006

2005
Compression, Clustering, and Pattern Discovery in Very High-Dimensional Discrete-Attribute Data Sets.
IEEE Trans. Knowl. Data Eng., 2005

Iterative-improvement-based declustering heuristics for multi-disk databases.
Inf. Syst., 2005

Redundant reader elimination in RFID systems.
Proceedings of the Second Annual IEEE Communications Society Conference on Sensor, 2005

Pairwise Local Alignment of Protein Interaction Networks Guided by Models of Evolution.
Proceedings of the Research in Computational Molecular Biology, 2005

2004
Conquest: A Distributed Tool for Constructing Summaries of High-Dimensional Discrete Attribute Data Sets.
Proceedings of the Fourth SIAM International Conference on Data Mining, 2004

An efficient algorithm for detecting frequent subgraphs in biological networks.
Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
PROXIMUS: a framework for analyzing very high dimensional discrete-attributed datasets.
Proceedings of the Ninth ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, Washington, DC, USA, August 24, 2003

Algorithms for Bounded-Error Correlation of High Dimensional Data in Microarray Experiments.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

2002
Algebraic Techniques for Analysis of Large Discrete-Valued Datasets.
Proceedings of the Principles of Data Mining and Knowledge Discovery, 2002


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