Hakim Tafer

According to our database, Hakim Tafer authored at least 15 papers between 2005 and 2014.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2014

The genome of the recently domesticated crop plant sugar beet (<i>Beta vulgaris</i>) Open.

Juliane C. Dohm, André E. Minoche, Daniela Holtgräwe, Salvador Capella-Gutiérrez, Falk Zakrzewski, Hakim Tafer, Oliver Rupp, Thomas Rosleff Sörensen, Ralf Stracke, Richard Reinhardt, Alexander Goesmann, Thomas Kraft, Britta Schulz, Peter F. Stadler, Thomas Schmidt, Toni Gabaldón, Hans Lehrach, Bernd Weisshaar, Heinz Himmelbauer

Nat., 2014

snoStrip: a snoRNA annotation pipeline.

Sebastian Bartschat, Stephanie Kehr, Hakim Tafer, Peter F. Stadler, Jana Hertel

Bioinform., 2014

2013

The RNAsnp web server: predicting SNP effects on local RNA secondary structure.

Radhakrishnan Sabarinathan, Hakim Tafer, Stefan E. Seemann, Ivo L. Hofacker, Peter F. Stadler, Jan Gorodkin

Nucleic Acids Res., 2013

2011

RNApredator: fast accessibility-based prediction of sRNA targets.

Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker

Nucleic Acids Res., 2011

Fast accessibility-based prediction of RNA-RNA interactions.

Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker

Bioinform., 2011

PLEXY: efficient target prediction for box C/D snoRNAs.

Stephanie Kehr, Sebastian Bartschat, Peter F. Stadler, Hakim Tafer

Bioinform., 2011

ViennaRNA Package 2.0.

Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker

Algorithms Mol. Biol., 2011

MicroRNA or Not MicroRNA?

David Langenberger, Sebastian Bartschat, Jana Hertel, Steve Hoffmann, Hakim Tafer, Peter F. Stadler

Proceedings of the Advances in Bioinformatics and Computational Biology, 2011

2010

<tt>RNAsnoop</tt>: efficient target prediction for H/ACA snoRNAs.

Hakim Tafer, Stephanie Kehr, Jana Hertel, Ivo L. Hofacker, Peter F. Stadler

Bioinform., 2010

2008

www.rnaworkbench.com: A new program for analyzing RNA interference.

Radka Svobodová Vareková, Ivan Bradác, Martin Plchút, Michal Skrdla, Michael Wacenovsky, Helmuth Mahr, Georg Mayer, Herbert Tanner, Hermann Brugger, Josef Withalm, Peter Lederer, Heinrich J. Huber, Gerhard Gierlinger, Ronald Graf, Hakim Tafer, Ivo L. Hofacker, Peter Schuster, Martin Polcík

Comput. Methods Programs Biomed., 2008

RNAplex: a fast tool for RNA-RNA interaction search.

Hakim Tafer, Ivo L. Hofacker

Bioinform., 2008

Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics.

Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker

Proceedings of the Bioinformatics Research and Development, 2008

2007

RNAplex a Fast and Flexible RNA-RNA Interaction Search Tool.

Hakim Tafer

Proceedings of the German Conference on Bioinformatics, 2007

2006

Partition function and base pairing probabilities of RNA heterodimers.

Stephan H. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker

Algorithms Mol. Biol., 2006

2005

Thermodynamics of RNA-RNA Binding.

Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker

Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005