Florian Eggenhofer

According to our database, Florian Eggenhofer authored at least 10 papers between 2011 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Peakhood: individual site context extraction for CLIP-seq peak regions.

Michael Uhl, Dominik Rabsch, Florian Eggenhofer, Rolf Backofen

Bioinform., 2022

RiboReport - benchmarking tools for ribosome profiling-based identification of open reading frames in bacteria.

Rick Gelhausen, Teresa Müller, Sarah L. Svensson, Omer S. Alkhnbashi, Cynthia M. Sharma, Florian Eggenhofer, Rolf Backofen

Briefings Bioinform., 2022

2021

<tt>CRISPRloci: </tt> comprehensive and accurate annotation of CRISPR-Cas systems.

Omer S. Alkhnbashi, Alexander Mitrofanov, Robson Bonidia, Martin Raden, Van Dinh Tran, Florian Eggenhofer, Shiraz A. Shah, Ekrem Öztürk, Victor Alexandre Padilha, Danilo Sipoli Sanches, André C. P. L. F. de Carvalho, Rolf Backofen

Nucleic Acids Res., 2021

2019

The RNA workbench 2.0: next generation RNA data analysis.

Jörg Fallmann, Pavankumar Videm, Andrea Bagnacani, Bérénice Batut, Maria A. Doyle, Tomas Klingström, Florian Eggenhofer, Peter F. Stadler, Rolf Backofen, Björn A. Grüning

Nucleic Acids Res., 2019

2018

Freiburg RNA tools: a central online resource for RNA-focused research and teaching.

Martin Raden, Syed M. Ali, Omer S. Alkhnbashi, Anke Busch, Fabrizio Costa, Jason A. Davis, Florian Eggenhofer, Rick Gelhausen, Jens Georg, Steffen Heyne, Michael Hiller, Kousik Kundu, Robert Kleinkauf, Steffen Lott, Mostafa M. Mohamed, Alexander Mattheis, Milad Miladi, Andreas S. Richter, Sebastian Will, Joachim Wolff, Patrick R. Wright, Rolf Backofen

Nucleic Acids Res., 2018

CMV: visualization for RNA and protein family models and their comparisons.

Florian Eggenhofer, Ivo L. Hofacker, Rolf Backofen, Christian Höner zu Siederdissen

Bioinform., 2018

2017

The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.

Björn A. Grüning, Jörg Fallmann, Dilmurat Yusuf, Sebastian Will, Anika Erxleben, Florian Eggenhofer, Torsten Houwaart, Bérénice Batut, Pavankumar Videm, Andrea Bagnacani, Markus Wolfien, Steffen Lott, Youri Hoogstrate, Wolfgang R. Hess, Olaf Wolkenhauer, Steve Hoffmann, Altuna Akalin, Uwe Ohler, Peter F. Stadler, Rolf Backofen

Nucleic Acids Res., 2017

2013

CMCompare webserver: comparing RNA families via covariance models.

Florian Eggenhofer, Ivo L. Hofacker, Christian Höner zu Siederdissen

Nucleic Acids Res., 2013

2011

RNApredator: fast accessibility-based prediction of sRNA targets.

Florian Eggenhofer, Hakim Tafer, Peter F. Stadler, Ivo L. Hofacker

Nucleic Acids Res., 2011

Fast accessibility-based prediction of RNA-RNA interactions.

Hakim Tafer, Fabian Amman, Florian Eggenhofer, Peter F. Stadler, Ivo L. Hofacker

Bioinform., 2011