Alexander Goesmann

According to our database, Alexander Goesmann authored at least 30 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data.

Patrick Blumenkamp, Max Pfister, Sonja Diedrich, Karina Brinkrolf, Sebastian Jaenicke, Alexander Goesmann

BMC Bioinform., December, 2024

2023

Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities.

Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Towards a Research Data Commons in the German National Research Data Infrastructure NFDI: Vision, Governance, Architecture.

Michael Diepenbroek, Ivaylo Kostadinov, Bernhard Seeger, Frank Oliver Glöckner, Marius A. Dieckmann, Alexander Goesmann, Barbara Ebert, Sonja Schimmler, York Sure-Vetter

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

The Aruna Object Storage A Distributed Multi Cloud Object Storage System for Scientific Data Management.

Marius A. Dieckmann, Sebastian Beyvers, Jannis Hochmuth, Anna Rehm, Frank Förster, Alexander Goesmann

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022

Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning.

Yunxiao Ren, Trinad Chakraborty, Swapnil Doijad, Linda Falgenhauer, Jane Falgenhauer, Alexander Goesmann, Anne-Christin Hauschild, Oliver Schwengers, Dominik Heider

Bioinform., 2022

2021

EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure.

Marius A. Dieckmann, Sebastian Beyvers, Rudel Christian Nkouamedjo-Fankep, Patrick Harald Georg Hanel, Lukas Jelonek, Jochen Blom, Alexander Goesmann

Nucleic Acids Res., 2021

2020

ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates.

Oliver Schwengers, Andreas Hoek, Moritz Fritzenwanker, Linda Falgenhauer, Torsten Hain, Trinad Chakraborty, Alexander Goesmann

PLoS Comput. Biol., 2020

ReferenceSeeker: rapid determination of appropriate reference genomes.

Oliver Schwengers, Torsten Hain, Trinad Chakraborty, Alexander Goesmann

J. Open Source Softw., 2020

2016

EDGAR 2.0: an enhanced software platform for comparative gene content analyses.

Jochen Blom, Julian Kreis, Sebastian Spänig, Tobias Juhre, Claire Bertelli, Corinna Ernst, Alexander Goesmann

Nucleic Acids Res., 2016

ReadXplorer 2 - detailed read mapping analysis and visualization from one single source.

Rolf Hilker, Kai Bernd Stadermann, Oliver Schwengers, Evgeny Anisiforov, Sebastian Jaenicke, Bernd Weisshaar, Tobias Zimmermann, Alexander Goesmann

Bioinform., 2016

2014

The genome of the recently domesticated crop plant sugar beet (<i>Beta vulgaris</i>) Open.

Juliane C. Dohm, André E. Minoche, Daniela Holtgräwe, Salvador Capella-Gutiérrez, Falk Zakrzewski, Hakim Tafer, Oliver Rupp, Thomas Rosleff Sörensen, Ralf Stracke, Richard Reinhardt, Alexander Goesmann, Thomas Kraft, Britta Schulz, Peter F. Stadler, Thomas Schmidt, Toni Gabaldón, Hans Lehrach, Bernd Weisshaar, Heinz Himmelbauer

Nat., 2014

AKE - the Accelerated k-mer Exploration web-tool for rapid taxonomic classification and visualization.

Daniel Langenkämper, Alexander Goesmann, Tim W. Nattkemper

BMC Bioinform., 2014

ReadXplorer - visualization and analysis of mapped sequences.

Rolf Hilker, Kai Bernd Stadermann, Daniel Doppmeier, Jörn Kalinowski, Jens Stoye, Jasmin Straube, Jörn Winnebald, Alexander Goesmann

Bioinform., 2014

2013

MeltDB 2.0-advances of the metabolomics software system.

Nikolas Kessler, Heiko Neuweger, Anja Bonte, Georg Langenkämper, Karsten Niehaus, Tim W. Nattkemper, Alexander Goesmann

Bioinform., 2013

2011

Conveyor: a workflow engine for bioinformatic analyses.

Burkhard Linke, Robert Giegerich, Alexander Goesmann

Bioinform., 2011

Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.

Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jörn Kalinowski, Jens Stoye, Alexander Goesmann

Bioinform., 2011

2009

Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format.

Justina Krawczyk, Alexander Goesmann, Ralf Nolte, Martin Werber, Bernd Weisshaar

Source Code Biol. Medicine, 2009

Visualizing post genomics data-sets on customized pathway maps by ProMeTra - aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example.

Heiko Neuweger, Marcus Persicke, Stefan P. Albaum, Thomas Bekel, Michael Dondrup, Andrea T. Hüser, Jörn Winnebald, Jessica Schneider, Jörn Kalinowski, Alexander Goesmann

BMC Syst. Biol., 2009

WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads.

Wolfgang Gerlach, Sebastian Jünemann, Felix Tille, Alexander Goesmann, Jens Stoye

BMC Bioinform., 2009

EMMA 2 - A MAGE-compliant system for the collaborative analysis and integration of microarray data.

Michael Dondrup, Stefan P. Albaum, Thasso Griebel, Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane K. Kleindt, Helge Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann

BMC Bioinform., 2009

TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach.

Naryttza N. Diaz, Lutz Krause, Alexander Goesmann, Karsten Niehaus, Tim W. Nattkemper

BMC Bioinform., 2009

EDGAR: A software framework for the comparative analysis of prokaryotic genomes.

Jochen Blom, Stefan P. Albaum, Daniel Doppmeier, Alfred Pühler, Frank-Jörg Vorhölter, Martha Zakrzewski, Alexander Goesmann

BMC Bioinform., 2009

Qupe - a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments.

Stefan P. Albaum, Heiko Neuweger, Benjamin Fränzel, Sita Lange, Dominik Mertens, Christian Trötschel, Dirk Wolters, Jörn Kalinowski, Tim W. Nattkemper, Alexander Goesmann

Bioinform., 2009

2008

Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.

Sebastian Oehm, David R. Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann

Nucleic Acids Res., 2008

MeltDB: a software platform for the analysis and integration of metabolomics experiment data.

Heiko Neuweger, Stefan P. Albaum, Michael Dondrup, Marcus Persicke, Tony Watt, Karsten Niehaus, Jens Stoye, Alexander Goesmann

Bioinform., 2008

2007

CoryneCenter - An online resource for the integrated analysis of corynebacterial genome and transcriptome data.

Heiko Neuweger, Jan Baumbach, Stefan P. Albaum, Thomas Bekel, Michael Dondrup, Andrea T. Hüser, Jörn Kalinowski, Sebastian Oehm, Alfred Pühler, Sven Rahmann, Jochen Weile, Alexander Goesmann

BMC Syst. Biol., 2007

2005

BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser.

Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer

Nucleic Acids Res., 2005

BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison.

Daniela Bartels, Sebastian Kespohl, Stefan P. Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster

Bioinform., 2005

2004

Development of joint application strategies for two microbial gene finders.

Alice Carolyn McHardy, Alexander Goesmann, Alfred Pühler, Folker Meyer

Bioinform., 2004

2002

PathFinder: reconstruction and dynamic visualization of metabolic pathways.

Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich

Bioinform., 2002