Toni Gabaldón

Orcid: 0000-0003-0019-1735

According to our database1, Toni Gabaldón authored at least 33 papers between 2005 and 2023.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2023
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity.
F1000Research, 2023

2022
The Quest for Orthologs orthology benchmark service in 2022.
Nucleic Acids Res., 2022

PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies.
Nucleic Acids Res., 2022

Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches.
Briefings Bioinform., 2022

2021
SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files.
Bioinform., 2021

2020
MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life.
Nucleic Acids Res., 2020

HaploTypo: a variant-calling pipeline for phased genomes.
Bioinform., 2020

EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes.
Bioinform., 2020

CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies.
Bioinform., 2020

2018
Gearing up to handle the mosaic nature of life in the quest for orthologs.
Bioinform., 2018

2016
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences.
Nucleic Acids Res., 2016

ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods.
Database J. Biol. Databases Curation, 2016

2014
The genome of the recently domesticated crop plant sugar beet (<i>Beta vulgaris</i>) Open.
Nat., 2014

eggNOG v4.0: nested orthology inference across 3686 organisms.
Nucleic Acids Res., 2014

PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome.
Nucleic Acids Res., 2014

Big data and other challenges in the quest for orthologs.
Bioinform., 2014

2013
Measuring guide-tree dependency of inferred gaps in progressive aligners.
Bioinform., 2013

2012
Toward community standards in the quest for orthologs.
Bioinform., 2012

2011
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing.
Nucleic Acids Res., 2011

PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.
Nucleic Acids Res., 2011

Assigning duplication events to relative temporal scales in genome-wide studies.
Bioinform., 2011

CycADS: an annotation database system to ease the development and update of BioCyc databases.
Database J. Biol. Databases Curation, 2011

Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication.
Briefings Bioinform., 2011

2010
PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome.
Nucleic Acids Res., 2010

Predicting phenotypic traits of prokaryotes from protein domain frequencies.
BMC Bioinform., 2010

ETE: a python Environment for Tree Exploration.
BMC Bioinform., 2010

2009
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses.
Bioinform., 2009

Automatic Prediction of the Genetic Code.
Proceedings of the Distributed Computing, 2009

2008
PhylomeDB: a database for genome-wide collections of gene phylogenies.
Nucleic Acids Res., 2008

2007
From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism.
PLoS Comput. Biol., 2007

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics.
Nucleic Acids Res., 2007

PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease.
Nucleic Acids Res., 2007

2005
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005


  Loading...