Huimin Zhao

According to our database, Huimin Zhao authored at least 13 papers between 2015 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2026

Protein Language Models Diverge from Natural Language: Comparative Analysis and Improved Inference.

Anna Hart, Chi Han, Jeonghwan Kim, Huimin Zhao, Heng Ji

CoRR, February, 2026

2025

The Future of Artificial Intelligence and the Mathematical and Physical Sciences (AI+MPS).

Andrew Ferguson, Marisa Lafleur, Lars Ruthotto, Jesse Thaler, Yuan-Sen Ting, Pratyush Tiwary, Soledad Villar, E. Paulo Alves, Jeremy Avigad, Simon Billinge, Camille L. Bilodeau, Keith Brown, Emmanuel J. Candès, Arghya Chattopadhyay, Bingqing Cheng, Jonathan Clausen, Connor W. Coley, Andrew J. Connolly, Fred Daum, Sijia S. Dong, Chrisy Xiyu Du, Cora Dvorkin, Cristiano Fanelli, Eric B. Ford, Luis Manuel Frutos, Nicolás García Trillos, Cecilia Garraffo, Robert Ghrist, Rafael Gómez-Bombarelli, Gianluca Guadagni, Sreelekha Guggilam, Sergei Gukov, Juan B. Gutierrez, Salman Habib, Johannes Hachmann, Boris Hanin, Philip C. Harris, Murray Holland, Elizabeth Holm, Hsin-Yuan Huang, Shih-Chieh Hsu, Nick Jackson, Olexandr Isayev, Heng Ji, Aggelos K. Katsaggelos, Jeremy Kepner, Yannis G. Kevrekidis, Michelle P. Kuchera, J. Nathan Kutz, Branislava Lalic, Ann Lee, Matt LeBlanc, Josiah Lim, Rebecca Lindsey, Yongmin Liu, Peter Y. Lu, Sudhir Malik, Vuk Mandic, Vidya B. Manian, Emeka P. Mazi, Pankaj Mehta, Peter Melchior, Brice Ménard, Jennifer Ngadiuba, Stella S. R. Offner, Elsa Olivetti, Shyue Ping Ong, Christopher Rackauckas, Philippe Rigollet, Chad Risko, Philip Romero, Grant M. Rotskoff, Brett Savoie, Uros Seljak, David Shih, Gary Shiu, Dima Shlyakhtenko, Eva Silverstein, Taylor Sparks, Thomas Strohmer, Christopher Stubbs, Stephen Thomas, Suriyanarayanan Vaikuntanathan, René Vidal, Francisco Villaescusa-Navarro, Gregory Voth, Benjamin Wandelt, Rachel Ward, Melanie Weber, Risa Wechsler, Stephen Whitelam, Olaf Wiest, Mike Williams, Zhuoran Yang, Yaroslava G. Yingling, Bin Yu, Shuwen Yue, Ann Zabludoff, Huimin Zhao, Tong Zhang

CoRR, September, 2025

AccFG: Accurate Functional Group Extraction and Molecular Structure Comparison.

Xuan Liu, Sarathkrishna Swaminathan, Dmitry Zubarev, Brandi Ransom, Nathaniel Park, Kristin Schmidt, Huimin Zhao

J. Chem. Inf. Model., 2025

Synteny plot quality control with SyntenyQC.

Timothy D. J. Kirkwood, Jack A. Connolly, Ee Lui Ang, Huimin Zhao, Eriko Takano, Rainer Breitling

Bioinform., 2025

FGBench: A Dataset and Benchmark for Molecular Property Reasoning at Functional Group-Level in Large Language Models.

Xuan Liu, Siru Ouyang, Xianrui Zhong, Jiawei Han, Huimin Zhao

Proceedings of the Advances in Neural Information Processing Systems 38: Annual Conference on Neural Information Processing Systems 2025, 2025

2024

Chemoenzymatic Synthesis Planning Guided by Reaction Type Score.

Hongxiang Li, Xuan Liu, Guangde Jiang, Huimin Zhao

J. Chem. Inf. Model., 2024

Molecule Maker Lab Institute: Accelerating, advancing, and democratizing molecular innovation.

Martin D. Burke, Scott E. Denmark, Ying Diao, Jiawei Han, Rachel D. Switzky, Huimin Zhao

AI Mag., 2024

Chem-FINESE: Validating Fine-Grained Few-shot Entity Extraction through Text Reconstruction.

Qingyun Wang, Zixuan Zhang, Hongxiang Li, Xuan Liu, Jiawei Han, Huimin Zhao, Heng Ji

Proceedings of the Findings of the Association for Computational Linguistics: EACL 2024, 2024

Gene-Metabolite Association Prediction with Interactive Knowledge Transfer Enhanced Graph for Metabolite Production.

Kexuan Xin, Qingyun Wang, Junyu Chen, Pengfei Yu, Huimin Zhao, Heng Ji

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2024

2023

Reaction Miner: An Integrated System for Chemical Reaction Extraction from Textual Data.

Ming Zhong, Siru Ouyang, Yizhu Jiao, Priyanka Kargupta, Leo Luo, Yanzhen Shen, Bobby Zhou, Xianrui Zhong, Xuan Liu, Hongxiang Li, Jinfeng Xiao, Minhao Jiang, Vivian Hu, Xuan Wang, Heng Ji, Martin D. Burke, Huimin Zhao, Jiawei Han

Proceedings of the 2023 Conference on Empirical Methods in Natural Language Processing, 2023

2021

TriGORank: A Gene Ontology Enriched Learning-to-Rank Framework for Trigenic Fitness Prediction.

Sahiti Labhishetty, Ismini Lourentzou, Michael Jeffrey Volk, Shekhar Mishra, Huimin Zhao, Chengxiang Zhai

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Evolutionary Context-Integrated Deep Sequence Modeling for Protein Engineering.

Yunan Luo, Lam Vo, Hantian Ding, Yufeng Su, Yang Liu, Wesley Wei Qian, Huimin Zhao, Jian Peng

Proceedings of the Research in Computational Molecular Biology, 2020

2015

Chromatin architecture reorganization during stem cell differentiation Open.

Jesse R. Dixon, Inkyung Jung, Siddarth Selvaraj, Yin Shen, Jessica E. Antosiewicz-Bourget, Ahyoung Lee, Zhen Ye, Audrey Kim, Nisha Rajagopal, Wei Xie, Yarui Diao, Jing Liang, Huimin Zhao, Victor V. Lobanenkov, Joseph R. Ecker, James A. Thomson, Bing Ren

Nat., 2015