Ilpo Vattulainen

According to our database, Ilpo Vattulainen authored at least 13 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of five.

2023

Unbreaking Assemblies in Molecular Simulations with Periodic Boundaries.

Bart M. H. Bruininks, Tsjerk A. Wassenaar, Ilpo Vattulainen

J. Chem. Inf. Model., June, 2023

2019

Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions.

Matti Javanainen, Giray Enkavi, Ramon Guixà-González, Waldemar Kulig, Hector Martinez-Seara, Ilya Levental, Ilpo Vattulainen

PLoS Comput. Biol., 2019

2018

Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling.

Tatu Pantsar, Sami Rissanen, Daniel Dauch, Tuomo Laitinen, Ilpo Vattulainen, Antti Poso

PLoS Comput. Biol., 2018

2017

<i>doGlycans</i>-Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers for GROMACS.

Reinis Danne, Chetan S. Poojari, Hector Martinez-Seara, Sami Rissanen, Fabio Lolicato, Tomasz Róg, Ilpo Vattulainen

J. Chem. Inf. Model., October, 2017

Atomistic fingerprint of hyaluronan-CD44 binding.

Joni Vuorio, Ilpo Vattulainen, Hector Martinez-Seara

PLoS Comput. Biol., 2017

Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin.

Giray Enkavi, Heikki Mikkolainen, Burçin Güngör, Elina Ikonen, Ilpo Vattulainen

PLoS Comput. Biol., 2017

2014

How Anacetrapib Inhibits the Activity of the Cholesteryl Ester Transfer Protein? Perspective through Atomistic Simulations.

Tarja Äijänen, Artturi Koivuniemi, Matti Javanainen, Sami Rissanen, Tomasz Róg, Ilpo Vattulainen

PLoS Comput. Biol., 2014

2012

Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations.

Artturi Koivuniemi, Timo Vuorela, Petri T. Kovanen, Ilpo Vattulainen, Marja T. Hyvönen

PLoS Comput. Biol., 2012

2010

Role of Lipids in Spheroidal High Density Lipoproteins.

Timo Vuorela, Andrea Catte, Perttu S. Niemelä, Anette Hall, Marja T. Hyvönen, Siewert J. Marrink, Mikko Karttunen, Ilpo Vattulainen

PLoS Comput. Biol., 2010

2009

Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel.

Pär Bjelkmar, Perttu S. Niemelä, Ilpo Vattulainen, Erik Lindahl

PLoS Comput. Biol., 2009

2007

Assessing the Nature of Lipid Raft Membranes.

Perttu S. Niemelä, Samuli Ollila, Marja T. Hyvönen, Mikko Karttunen, Ilpo Vattulainen

PLoS Comput. Biol., 2007

Long-range interactions and parallel scalability in molecular simulations.

Michael Patra, Marja T. Hyvönen, Emma Falck, Mohsen Sabouri-Ghomi, Ilpo Vattulainen, Mikko Karttunen

Comput. Phys. Commun., 2007

2004

Modeling Lipid-Sterol Bilayers: Applications to Structural Evolution, Lateral Diffusion, and Rafts.

Martin J. Zuckermann, John H. Ipsen, Ling Miao, Ole G. Mouritsen, Morten Nielsen, James Polson, Jenifer Thewalt, Ilpo Vattulainen, Hong Zhu

Proceedings of the Numerical Computer Methods, Part D, 2004