Irene Otero-Muras

According to our database, Irene Otero-Muras authored at least 20 papers between 2007 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2025

A Computational Framework for Optimal and Model Predictive Control of Stochastic Gene Regulatory Networks.

Hamza Faquir, Manuel Pájaro, Irene Otero-Muras

IEEE Trans. Comput. Biol. Bioinform., 2025

An optimal-control framework for reaction diffusion systems with application to synthetic developmental biology.

Mohamed Amine Ouchdiri, Hamza Faquir, Saad Benjelloun, Mohamed Maghenem, Irene Otero-Muras, Adnane Saoud

Proceedings of the 64th IEEE Conference on Decision and Control, 2025

2024

Analysis and Control of Gene Regulation Network Models Using Kinetic Semi-Discretization.

Mihály A. Vághy, Irene Otero-Muras, Gábor Szederkényi

Proceedings of the European Control Conference, 2024

2023

IDESS: a toolbox for identification and automated design of stochastic gene circuits.

Carlos Sequeiros, Manuel Pájaro, Carlos Vázquez, Julio R. Banga, Irene Otero-Muras

Bioinform., October, 2023

Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of Biosystems.

Carlos Sequeiros, Irene Otero-Muras, Carlos Vázquez, Julio R. Banga

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation laws.

Brandon Reyes, Irene Otero-Muras, Vladislav A. Petyuk

BMC Bioinform., 2022

Chemical Master Equation model to predict the COVID-19 epidemic spread.

Manuel Pájaro, Antonio A. Alonso, Irene Otero-Muras

Proceedings of V XoveTIC Conference, 2022

2020

BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networks.

Pencho Yordanov, Jörg Stelling, Irene Otero-Muras

Bioinform., 2020

CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networks.

Brandon Reyes, Irene Otero-Muras, Michael T. Shuen, Alexandre M. Tartakovsky, Vladislav A. Petyuk

Bioinform., 2020

2018

Routes to Multiple Equilibria for Mass-Action Kinetic Systems.

Antonio A. Alonso, Irene Otero-Muras, Manuel Pájaro

Complex., 2018

SELANSI: a toolbox for simulation of stochastic gene regulatory networks.

Manuel Pájaro, Irene Otero-Muras, Carlos Vázquez, Antonio A. Alonso

Bioinform., 2018

2017

Chemical Reaction Network Theory elucidates sources of multistability in interferon signaling.

Irene Otero-Muras, Pencho Yordanov, Jörg Stelling

PLoS Comput. Biol., 2017

2016

SYNBADm: a tool for optimization-based automated design of synthetic gene circuits.

Irene Otero-Muras, David Henriques, Julio R. Banga

Bioinform., 2016

2014

A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves.

Irene Otero-Muras, Pencho Yordanov, Jörg Stelling

BMC Syst. Biol., 2014

Multicriteria global optimization for biocircuit design.

Irene Otero-Muras, Julio R. Banga

BMC Syst. Biol., 2014

Optimization Based Design of Synthetic Oscillators from Standard Biological Parts.

Irene Otero-Muras, Julio R. Banga

Proceedings of the Computational Methods in Systems Biology, 2014

2010

Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implications.

Irene Otero-Muras, Amaya Franco-Uría, Antonio A. Alonso, Eva Balsa-Canto

Environ. Model. Softw., 2010

2008

Local dissipative Hamiltonian description of reversible reaction networks.

Irene Otero-Muras, Gábor Szederkényi, Antonio A. Alonso, Katalin M. Hangos

Syst. Control. Lett., 2008

Dynamic analysis and control of biochemical reaction networks.

Irene Otero-Muras, Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso

Math. Comput. Simul., 2008

2007

A systematic approach to plant-wide control based on thermodynamics.

Luis T. Antelo, Irene Otero-Muras, Julio R. Banga, Antonio A. Alonso

Comput. Chem. Eng., 2007