Ivan S. Yevshin

According to our database, Ivan S. Yevshin authored at least 11 papers between 2016 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Prediction and annotation of alternative transcription starts and promoter shift in the chicken genome.

Valentina A. Grushina, Ivan S. Yevshin, Oleg A. Gusev, Fedor A. Kolpakov, Olga I. Stanishevskaya, Elena S. Fedorova, Natalia A. Zinovieva, Sergey S. Pintus

J. Bioinform. Comput. Biol., 2025

2022

BioUML - towards a universal research platform.

Fedor A. Kolpakov, Ilya R. Akberdin, Ilya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Mikhail Kulyashov, Elena Kutumova, Sergey S. Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Sergey Zhatchenko, Alexander E. Kel

Nucleic Acids Res., 2022

ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.

Alexandr Boytsov, Sergey Abramov, Ariuna Z. Aiusheeva, Alexandra M. Kasianova, Eugene Baulin, Ivan A. Kuznetsov, Yurii S. Aulchenko, Semyon Kolmykov, Ivan S. Yevshin, Fedor A. Kolpakov, Ilya E. Vorontsov, Vsevolod J. Makeev, Ivan V. Kulakovskiy

Nucleic Acids Res., 2022

2021

GTRD: an integrated view of transcription regulation.

Semyon Kolmykov, Ivan S. Yevshin, Mikhail Kulyashov, Ruslan N. Sharipov, Yury V. Kondrakhin, Vsevolod J. Makeev, Ivan V. Kulakovskiy, Alexander E. Kel, Fedor A. Kolpakov

Nucleic Acids Res., 2021

2019

GTRD: a database on gene transcription regulation - 2019 update.

Ivan S. Yevshin, Ruslan N. Sharipov, Semyon Kolmykov, Yury V. Kondrakhin, Fedor A. Kolpakov

Nucleic Acids Res., 2019

BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.

Fedor A. Kolpakov, Ilya R. Akberdin, Timur A. Kashapov, llya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Elena Kutumova, Nikita Mandrik, Sergey S. Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Alexander E. Kel

Nucleic Acids Res., 2019

Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.

Alexander E. Kel, Ulyana Boyarskikh, Philip Stegmaier, Leonid S. Leskov, Andrey V. Sokolov, Ivan S. Yevshin, Nikita Mandrik, Daria Stelmashenko, Jeannette Koschmann, Olga V. Kel-Margoulis, Mathias Krull, Anna Martínez-Cardús, Sebastian Moran, Manel Esteller, Fedor A. Kolpakov, Maxim Filipenko, Edgar Wingender

BMC Bioinform., 2019

2018

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.

Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Ruslan N. Sharipov, Alla D. Fedorova, Eugene I. Rumynskiy, Yulia A. Medvedeva, Arturo Magana-Mora, Vladimir B. Bajic, Dmitri A. Papatsenko, Fedor A. Kolpakov, Vsevolod J. Makeev

Nucleic Acids Res., 2018

2017

GTRD: a database of transcription factor binding sites identified by ChIP-seq experiments.

Ivan S. Yevshin, Ruslan N. Sharipov, Tagir F. Valeev, Alexander E. Kel, Fedor A. Kolpakov

Nucleic Acids Res., 2017

2016

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.

Ivan V. Kulakovskiy, Ilya E. Vorontsov, Ivan S. Yevshin, Anastasiia V. Soboleva, Artem S. Kasianov, Haitham Ashoor, Wail Ba-alawi, Vladimir B. Bajic, Yulia A. Medvedeva, Fedor A. Kolpakov, Vsevolod J. Makeev

Nucleic Acids Res., 2016

Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data.

Oxana A. Volkova, Yury V. Kondrakhin, Ivan S. Yevshin, Tagir F. Valeev, Ruslan N. Sharipov

J. Bioinform. Comput. Biol., 2016