Vladimir B. Bajic

According to our database1, Vladimir B. Bajic authored at least 79 papers between 1999 and 2019.

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Bibliography

2019
LncBook: a curated knowledgebase of human long non-coding RNAs.
Nucleic Acids Research, 2019

Characterization and identification of long non-coding RNAs based on feature relationship.
Bioinformatics, 2019

DeepGSR: an optimized deep-learning structure for the recognition of genomic signals and regions.
Bioinformatics, 2019

2018
Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease.
PLoS Computational Biology, 2018

HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Nucleic Acids Research, 2018

TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers.
Genom. Proteom. Bioinform., 2018

DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches.
Bioinformatics, 2018

2017
Semantic prioritization of novel causative genomic variants.
PLoS Computational Biology, 2017

DANNP: an efficient artificial neural network pruning tool.
PeerJ Computer Science, 2017

TcoF-DB v2: update of the database of human and mouse transcription co-factors and transcription factor interactions.
Nucleic Acids Research, 2017

bTSSfinder: a novel tool for the prediction of promoters in cyanobacteria and Escherichia coli.
Bioinformatics, 2017

2016
DESM: portal for microbial knowledge exploration systems.
Nucleic Acids Research, 2016

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.
Nucleic Acids Research, 2016

DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning.
J. Cheminformatics, 2016

DASPfind: new efficient method to predict drug-target interactions.
J. Cheminformatics, 2016

Progress and challenges in bioinformatics approaches for enhancer identification.
Briefings in Bioinformatics, 2016

2015
DDMGD: the database of text-mined associations between genes methylated in diseases from different species.
Nucleic Acids Research, 2015

LncRNAWiki: harnessing community knowledge in collaborative curation of human long non-coding RNAs.
Nucleic Acids Research, 2015

The Value and Significance of Metagenomics of Marine Environments.
Genom. Proteom. Bioinform., 2015

Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea - A Metagenomic Approach.
Genom. Proteom. Bioinform., 2015

First Insights into the Viral Communities of the Deep-sea Anoxic Brines of the Red Sea.
Genom. Proteom. Bioinform., 2015

Distinct profiling of antimicrobial peptide families.
Bioinformatics, 2015

DENdb: database of integrated human enhancers.
Database, 2015

2014
A promoter-level mammalian expression atlas.
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Nature, 2014

DEOP: a database on osmoprotectants and associated pathways.
Database, 2014

2013
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.
Nucleic Acids Research, 2013

Dragon exploration system on marine sponge compounds interactions.
J. Cheminformatics, 2013

PIMiner: a web tool for extraction of protein interactions from biomedical literature.
IJDMB, 2013

Poly(A) motif prediction using spectral latent features from human DNA sequences.
Bioinformatics, 2013

Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants.
Bioinformatics, 2013

Dragon PolyA Spotter: predictor of poly(A) motifs within human genomic DNA sequences.
Bioinformatics, 2013

HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data.
Bioinformatics, 2013

2012
DAMPD: a manually curated antimicrobial peptide database.
Nucleic Acids Research, 2012

Identification of estrogen responsive genes using esophageal squamous cell carcinoma (ESCC) as a model.
BMC Systems Biology, 2012

Protein domain recurrence and order can enhance prediction of protein functions.
Bioinformatics, 2012

2011
TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins.
Nucleic Acids Research, 2011

DDPC: Dragon Database of Genes associated with Prostate Cancer.
Nucleic Acids Research, 2011

An Optimized Recursive Learning Algorithm for Three-Layer Feedforward Neural Networks For Mimo Nonlinear System Identifications.
Intelligent Automation & Soft Computing, 2011

Network analysis of microRNAs and their regulation in human ovarian cancer.
BMC Systems Biology, 2011

In Silico discovery of transcription factors as potential diagnostic biomarkers of ovarian cancer.
BMC Systems Biology, 2011

Highly scalable ab initio genomic motif identification.
Proceedings of the Conference on High Performance Computing Networking, 2011

2010
Genome-wide analysis of regions similar to promoters of histone genes.
BMC Systems Biology, 2010

2009
Database for exploration of functional context of genes implicated in ovarian cancer.
Nucleic Acids Research, 2009

2008
Modeling transcription termination of selected gene groups using support vector machine.
Proceedings of the International Joint Conference on Neural Networks, 2008

2007
KBERG: KnowledgeBase for Estrogen Responsive Genes.
Nucleic Acids Research, 2007

2006
Editorial.
Int. J. Comput. Syst. Signal, 2006

Finding functional promoter motifs by computational methods: a word of caution.
IJBRA, 2006

Computational promoter analysis of mouse, rat and human antimicrobial peptide-coding genes.
BMC Bioinformatics, 2006

Dragon Promoter Mapper (DPM): a Bayesian framework for modelling promoter structures.
Bioinformatics, 2006

Intelligent Extraction Versus Advanced Query: Recognize Transcription Factors from Databases.
Proceedings of the Pattern Recognition in Bioinformatics, International Workshop, 2006

2005
Some Implementation Issues of Heuristic Methods for Motif Extraction from DNA Sequences.
Int. J. Comput. Syst. Signal, 2005

Promoter modeling: the case study of mammalian histone promoters.
Bioinformatics, 2005

Comparison of core promoters in Fugu rubripes and human.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

Modeling 5' regions of histone genes using Bayesian networks.
Proceedings of 3rd Asia-Pacific Bioinformatics Conference, 17-21 January 2005, Singapore, 2005

2004
ERGDB: Estrogen Responsive Genes Database.
Nucleic Acids Research, 2004

Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining.
Nucleic Acids Research, 2004

ANTIMIC: a database of antimicrobial sequences.
Nucleic Acids Research, 2004

2003
FIE2: a program for the extraction of genomic DNA sequences around the start and translation initiation site of human genes.
Nucleic Acids Research, 2003

Dragon ERE Finder version 2: a tool for accurate detection and analysis of estrogen response elements in vertebrate genomes.
Nucleic Acids Research, 2003

Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes.
Nucleic Acids Research, 2003

Content analysis of the core promoter region of human genes.
In Silico Biology, 2003

Editorial: Broadening the Scope of IJCSS.
Int. J. Comput. Syst. Signal, 2003

A fuzzy logic tuned polynomial based predictor for processes having long dead-times.
Proceedings of the 12th IEEE International Conference on Fuzzy Systems, 2003

From Informatics to Bioinformatics.
Proceedings of the First Asia-Pacific Bioinformatics Conference (APBC 2003), 2003

2002
New model and sliding mode control of hydraulic elevator velocity tracking system.
Simul. Pr. Theory, 2002

Information and sequence extraction around the 5'-end and translation initiation site of human genes.
In Silico Biology, 2002

Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review.
Informatica (Slovenia), 2002

An Intelligent System for Vertebrate Promoter Recognition.
IEEE Intelligent Systems, 2002

An on-line hybrid learning algorithm for multilayer perceptron in identification problems.
Comput. Electr. Eng., 2002

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters.
Bioinformatics, 2002

2000
Robust discrete adaptive input-output-based sliding mode controller.
Int. J. Systems Science, 2000

Genetic algorithms and extraction of rules for detection of short DNA motifs.
Int. J. Comput. Syst. Signal, 2000

Nonlinear self-turning controller for Hammerstein plants with application to a pressure tank.
Int. J. Comput. Syst. Signal, 2000

Special issue: Computer-Based Control Systems.
Int. J. Comput. Syst. Signal, 2000

AI-based discrete sliding-mode control for real-time implementation.
Int. J. Comput. Syst. Signal, 2000

Editorial message from the Editor-in-Chief.
Int. J. Comput. Syst. Signal, 2000

Editorial message.
Int. J. Comput. Syst. Signal, 2000

Comparing the Success of Different Prediction Software in Sequence Analysis: A Review.
Briefings in Bioinformatics, 2000

1999
Adaptive On-line ANN Learning Algorithm and Application to Identification of Non-linear Systems.
Informatica (Slovenia), 1999


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