Yury V. Kondrakhin

According to our database, Yury V. Kondrakhin authored at least 17 papers between 1994 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

BioUML - towards a universal research platform.

Fedor A. Kolpakov, Ilya R. Akberdin, Ilya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Mikhail Kulyashov, Elena Kutumova, Sergey Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Sergey Zhatchenko, Alexander E. Kel

Nucleic Acids Res., 2022

2021

GTRD: an integrated view of transcription regulation.

Semyon Kolmykov, Ivan S. Yevshin, Mikhail Kulyashov, Ruslan N. Sharipov, Yury V. Kondrakhin, Vsevolod J. Makeev, Ivan V. Kulakovskiy, Alexander E. Kel, Fedor A. Kolpakov

Nucleic Acids Res., 2021

2019

GTRD: a database on gene transcription regulation - 2019 update.

Ivan S. Yevshin, Ruslan N. Sharipov, Semyon Kolmykov, Yury V. Kondrakhin, Fedor A. Kolpakov

Nucleic Acids Res., 2019

BioUML: an integrated environment for systems biology and collaborative analysis of biomedical data.

Fedor A. Kolpakov, Ilya R. Akberdin, Timur A. Kashapov, llya Kiselev, Semyon Kolmykov, Yury V. Kondrakhin, Elena Kutumova, Nikita Mandrik, Sergey S. Pintus, Anna Ryabova, Ruslan N. Sharipov, Ivan S. Yevshin, Alexander E. Kel

Nucleic Acids Res., 2019

2018

Comparative analysis of protein-coding and long non-coding transcripts based on RNA sequence features.

Oxana A. Volkova, Yury V. Kondrakhin, Timur A. Kashapov, Ruslan N. Sharipov

J. Bioinform. Comput. Biol., 2018

2016

Assessment of translational importance of mammalian mRNA sequence features based on Ribo-Seq and mRNA-Seq data.

Oxana A. Volkova, Yury V. Kondrakhin, Ivan S. Yevshin, Tagir F. Valeev, Ruslan N. Sharipov

J. Bioinform. Comput. Biol., 2016

2008

Identification of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer.

Yury V. Kondrakhin, Ruslan N. Sharipov, Alexander E. Kel, Fedor A. Kolpakov

Silico Biol., 2008

2007

CYCLONET - an integrated database on cell cycle regulation and carcinogenesis.

Fedor A. Kolpakov, Vladimir Poroikov, Ruslan N. Sharipov, Yury V. Kondrakhin, Alexey V. Zakharov, Alexey Lagunin, Luciano Milanesi, Alexander E. Kel

Nucleic Acids Res., 2007

Recognition of interferon-inducible sites, promoters, and enhancers.

Elena A. Ananko, Yury V. Kondrakhin, Tatyana I. Merkulova, Nikolay A. Kolchanov

BMC Bioinform., 2007

1999

Integrated databases and computer systems for studying eukaryotic gene expression.

Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Anatoly S. Frolov, Elena A. Ananko, Fedor A. Kolpakov, Elena V. Ignatieva, Olga A. Podkolodnaya, T. N. Goryachkovskaya, Irina L. Stepanenko, Tatyana I. Merkulova, V. V. Babenko, Y. V. Ponomarenko, Alexey V. Kochetov, Nikolay L. Podkolodny, Denis G. Vorobiev, Sergey V. Lavryushev, Dmitry A. Grigorovich, Yury V. Kondrakhin, Luciano Milanesi, Edgar Wingender, Victor V. Solovyev, G. Christian Overton

Bioinform., 1999

1998

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.

Nikolay A. Kolchanov, Mikhail P. Ponomarenko, Alexander E. Kel, Yury V. Kondrakhin, Anatoly S. Frolov, Fedor A. Kolpakov, T. N. Goryachkovskaya, O. V. Kel, Elena A. Ananko, Elena V. Ignatieva, Olga A. Podkolodnaya, Vladimir N. Babenko, Irina L. Stepanenko, Aida G. Romashchenko, Tatyana I. Merkulova, Denis G. Vorobiev, Sergey V. Lavryushev, Y. V. Ponomarenko, Alexey V. Kochetov, G. B. Kolesov, Victor V. Solovyev, Luciano Milanesi, Nikolay L. Podkolodny, Edgar Wingender, T. Heinemeyer

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

1997

Detecting direct correlations between positions in multiple alignments of amino acid sequences.

Dmitry A. Afonnikov, Yury V. Kondrakhin, Igor I. Titov, Nikolay A. Kolchanov

Proceedings of the German Conference on Bioinformatics, 1997

1996

Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes.

Yury V. Kondrakhin, Fedor A. Kolpakov, Alexander E. Kel, Nikolay A. Kolchanov, Luciano Milanesi

Proceedings of the German Conference on Bioinformatics, 1996

1995

Eukaryotic promoter recognition by binding sites for transcription factors.

Yury V. Kondrakhin, Alexander E. Kel, Nikolay A. Kolchanov, Aida G. Romashchenko, Luciano Milanesi

Comput. Appl. Biosci., 1995

PROANAL version 2: multifunctional program for analysis of multiple protein sequence alignments and for studying the structure--activity relationships in protein families.

A. M. Eroshkin, V. I. Fomin, P. A. Zhilkin, V. V. Ivanisenko, Yury V. Kondrakhin

Comput. Appl. Biosci., 1995

Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences.

Alexander E. Kel, Yury V. Kondrakhin, Ph. A. Kolpakov, O. V. Kel, Aida G. Romashchenko, Edgar Wingender, Luciano Milanesi, Nikolay A. Kolchanov

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1994

Construction of a generalized consensus matrix for recognition of vertebrate pre-mRNA 3'-terminal processing sites.

Yury V. Kondrakhin, V. V. Shamin, Nikolay A. Kolchanov

Comput. Appl. Biosci., 1994