Vsevolod J. Makeev
Orcid: 0000-0001-9405-9748Affiliations:
- Vavilov Institute of General Genetics (VIGG), Department of Computational Systems Biology
According to our database1,
Vsevolod J. Makeev
authored at least 26 papers
between 1996 and 2022.
Collaborative distances:
Collaborative distances:
Timeline
Legend:
Book In proceedings Article PhD thesis Dataset OtherLinks
Online presence:
-
on orcid.org
On csauthors.net:
Bibliography
2022
ANANASTRA: annotation and enrichment analysis of allele-specific transcription factor binding at SNPs.
Nucleic Acids Res., 2022
2021
2018
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Nucleic Acids Res., 2018
2016
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.
Nucleic Acids Res., 2016
2015
PERFECTOS-APE - Predicting Regulatory Functional Effect of SNPs by Approximate P-value Estimation.
Proceedings of the BIOINFORMATICS 2015, 2015
2014
2013
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.
Nucleic Acids Res., 2013
From binding motifs in Chip-seq Data to Improved Models of transcription factor binding Sites.
J. Bioinform. Comput. Biol., 2013
Jaccard index based similarity measure to compare transcription factor binding site models.
Algorithms Mol. Biol., 2013
Learning Advanced TFBS Models from Chip-Seq Data - diChIPMunk: Effective Construction of Dinucleotide Positional Weight Matrices.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013
2012
PLoS Comput. Biol., 2012
A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
2011
A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites.
Bioinform., 2011
2010
2009
Bioinform., 2009
2007
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of <i>cis</i>-regulatory modules.
Algorithms Mol. Biol., 2007
2006
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.
Bioinform., 2006
2005
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
Bioinform., 2005
2003
Analysis of bacterial RM-Systems through genome-scale analysis and related taxonomic issues.
Silico Biol., 2003
The channel in transporters is formed by residues that are rare in transmembrane helices.
Silico Biol., 2003
2001
Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software.
Bioinform., 2001
2000
Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition.
Proceedings of the Computational Biology, 2000
Three Variations on Word Counting.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000
1996
Search of periodicities in primary structure of biopolymers: a general Fourier approach.
Comput. Appl. Biosci., 1996