Vsevolod J. Makeev

According to our database1, Vsevolod J. Makeev authored at least 24 papers between 1996 and 2018.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2018
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis.
Nucleic Acids Research, 2018

2016
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models.
Nucleic Acids Research, 2016

2015
PERFECTOS-APE - Predicting Regulatory Functional Effect of SNPs by Approximate P-value Estimation.
Proceedings of the BIOINFORMATICS 2015, 2015

2014
A promoter-level mammalian expression atlas.
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Nature, 2014

2013
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models.
Nucleic Acids Research, 2013

From binding motifs in Chip-seq Data to Improved Models of transcription factor binding Sites.
J. Bioinformatics and Computational Biology, 2013

Jaccard index based similarity measure to compare transcription factor binding site models.
Algorithms for Molecular Biology, 2013

Learning Advanced TFBS Models from Chip-Seq Data - diChIPMunk: Effective Construction of Dinucleotide Positional Weight Matrices.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013

2012
Exploring Massive, Genome Scale Datasets with the GenometriCorr Package.
PLoS Computational Biology, 2012

A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal Structure.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012

2011
A deeper look into transcription regulatory code by preferred pair distance templates for transcription factor binding sites.
Bioinformatics, 2011

2010
Empirical Potentials for ion Binding in proteins.
J. Bioinformatics and Computational Biology, 2010

Deep and wide digging for binding motifs in ChIP-Seq data.
Bioinformatics, 2010

2009
Motif discovery and motif finding from genome-mapped DNase footprint data.
Bioinformatics, 2009

2007
Exact p-value calculation for heterotypic clusters of regulatory motifs and its application in computational annotation of cis-regulatory modules.
Algorithms for Molecular Biology, 2007

2006
Short fuzzy tandem repeats in genomic sequences, identification, and possible role in regulation of gene expression.
Bioinformatics, 2006

2005
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length.
Bioinformatics, 2005

2003
Analysis of bacterial RM-Systems through genome-scale analysis and related taxonomic issues.
In Silico Biology, 2003

The channel in transporters is formed by residues that are rare in transmembrane helices.
In Silico Biology, 2003

2001
Segmentation of long genomic sequences into domains with homogeneous composition with BASIO software.
Bioinformatics, 2001

2000
DNA Segmentation Through the Bayesian Approach.
Journal of Computational Biology, 2000

Bayesian Approach to DNA Segmentation into Regions with Different Average Nucleotide Composition.
Proceedings of the Computational Biology, 2000

Three Variations on Word Counting.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

1996
Search of periodicities in primary structure of biopolymers: a general Fourier approach.
Computer Applications in the Biosciences, 1996


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