Edgar Wingender
Orcid: 0000-0002-7729-8453Affiliations:
- University of Göttingen, Germany
According to our database1,
Edgar Wingender
authored at least 103 papers
between 1994 and 2019.
Collaborative distances:
Collaborative distances:
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Bibliography
2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019
Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.
BMC Bioinform., 2019
2018
TFClass: expanding the classification of human transcription factors to their mammalian orthologs.
Nucleic Acids Res., 2018
mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.
Nucleic Acids Res., 2018
2017
2016
2015
Nucleic Acids Res., 2015
PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information.
BMC Bioinform., 2015
Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes.
BMC Bioinform., 2015
2014
BMC Syst. Biol., 2014
Quantum Coupled Mutation Finder: Predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming.
BMC Bioinform., 2014
2013
PLoS Comput. Biol., 2013
Nucleic Acids Res., 2013
Criteria for an updated Classification of Human transcription factor DNA-binding Domains.
J. Bioinform. Comput. Biol., 2013
Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems.
Comput. Methods Programs Biomed., 2013
MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters.
BMC Bioinform., 2013
Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell.
Algorithms Mol. Biol., 2013
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2013
2012
Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks.
BMC Syst. Biol., 2012
Bioinform., 2012
δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data.
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012
Proceedings of the 40 Jahre Informatik an der Technischen Universität Braunschweig, 1972, 2012
2011
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network.
BMC Syst. Biol., 2011
2010
2009
An approach to evaluate the topological significance of motifs and other patterns in regulatory networks.
BMC Syst. Biol., 2009
2008
EndoNet: an information resource about regulatory networks of cell-to-cell communication.
Nucleic Acids Res., 2008
The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks.
BMC Bioinform., 2008
The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.
Briefings Bioinform., 2008
2007
Nucleic Acids Res., 2007
2006
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
Nucleic Acids Res., 2006
TRANSFAC<sup>®</sup> and its module TRANSCompel<sup>®</sup>: transcriptional gene regulation in eukaryotes.
Nucleic Acids Res., 2006
TRANSPATH<sup>®</sup>: an information resource for storing and visualizing signaling pathways and their pathological aberrations.
Nucleic Acids Res., 2006
Beyond microarrays: Finding key transcription factors controlling signal transduction pathways.
BMC Bioinform., 2006
Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations.
Bioinform., 2006
2005
Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005
2004
Quo Vadis Bioinformatik, neue Konzepte und Arbeitsbereiche (Quo Vadis Bioinformatics - New Concepts and Areas).
it Inf. Technol., 2004
Deriving an ontology for human gene expression sources from the CYTOMER? database on human organs and cell types.
Silico Biol., 2004
Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods.
Bioinform., 2004
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinform., 2004
Proceedings of the Regulatory Genomics, 2004
From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004
2003
Nucleic Acids Res., 2003
TRANSPATH: An integrated database on signal transduction and a tool for array analysis.
Nucleic Acids Res., 2003
Nucleic Acids Res., 2003
TRANSPATH, TRANSFAC and CYTOMER as starting points for an ontology of regulatory networks.
Silico Biol., 2003
Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods.
Silico Biol., 2003
Silico Biol., 2003
2002
Nucleic Acids Res., 2002
Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002
2001
The TRANSPATH signal transduction database: a knowledge base on signal transduction networks.
Bioinform., 2001
-PheGe- a novel concept for in-silico analyses of genotype/phenotype relations.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
Modeling the Architecture of Regulatory Networks.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
The integrated TRANSFAC system as a basis for modeling the architecture of gene regulatory networks.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
TRANSFAC®_YEAST.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
ReAlSplice: A database on regulated alternative splicing.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
The SMAD-TGF-beta SignallingNetwork: TRANSFAC meets TRANSPATH.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
TRANSPATH - a database on signal transduction networks.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
MATCH<sup>TM</sup> - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
Cytomer: A database on gene expression sources.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001
2000
Nucleic Acids Res., 2000
COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.
Nucleic Acids Res., 2000
Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000
1999
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.
Nucleic Acids Res., 1999
Bioinform., 1999
The Transpath Signal Transduction Database.
Proceedings of the German Conference on Bioinformatics, 1999
PathoDB - a database that combines pathological data with molecular information.
Proceedings of the German Conference on Bioinformatics, 1999
S/MARt DB: A database on chromatin organizing S/MAR regions.
Proceedings of the German Conference on Bioinformatics, 1999
E2F composite units in promoters of cell cycle genes.
Proceedings of the German Conference on Bioinformatics, 1999
CYTOMER® : A database on gene expression sources.
Proceedings of the German Conference on Bioinformatics, 1999
A database framework for mapping expression patterns.
Proceedings of the German Conference on Bioinformatics, 1999
1998
Nucleic Acids Res., 1998
Transcription regulatory region analysis using signal detection and fuzzy clustering.
Bioinform., 1998
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998
Eine Hierarchie molekularbiologischer Datenbanken zur Beschreibung genregulatorischer Prozesse (Zusammenfassung).
Proceedings of the Data Mining und Data Warehousing, 1998
A hierarchy of databases for modeling gene regulatory mechanisms.
Proceedings of the German Conference on Bioinformatics, 1998
Combinatorial identification of promoters induced upon immune cell activation.
Proceedings of the German Conference on Bioinformatics, 1998
1997
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
Nucleic Acids Res., 1997
Identification of the significant conformational features of functional sites in B-DNA.
Proceedings of the German Conference on Bioinformatics, 1997
Transcription regulation regions revealed by Signal detection and fuzzy clusterfng.
Proceedings of the German Conference on Bioinformatics, 1997
1996
Nucleic Acids Res., 1996
Informationstechnik Tech. Inform., 1996
Combining structural analysis of DNA with search routines for the detection of transcription regulatory elements.
Comput. Appl. Biosci., 1996
Combined Approaches for the Detection of Regulatory Genomic Signals.
Proceedings of the German Conference on Bioinformatics, 1996
TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996
TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the German Conference on Bioinformatics, 1996
1995
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
1994
TRANSFAC Retrieval Program: A Network Model Database of Eukaryotic Transcription Regulating Sequences and Proteins.
J. Comput. Biol., 1994