Edgar Wingender

According to our database1, Edgar Wingender authored at least 103 papers between 1994 and 2019.

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Bibliography

2019
Walking pathways with positive feedback loops reveal DNA methylation biomarkers of colorectal cancer.
BMC Bioinformatics, 2019

2018
TFClass: expanding the classification of human transcription factors to their mammalian orthologs.
Nucleic Acids Research, 2018

mirTrans: a resource of transcriptional regulation on microRNAs for human cell lines.
Nucleic Acids Research, 2018

2017
geneXplainR: An R interface for the geneXplain platform.
J. Open Source Software, 2017

2016
Identifying cell-specific microRNA transcriptional start sites.
Bioinformatics, 2016

2015
TFClass: a classification of human transcription factors and their rodent orthologs.
Nucleic Acids Research, 2015

PC-TraFF: identification of potentially collaborating transcription factors using pointwise mutual information.
BMC Bioinformatics, 2015

Multiobjective triclustering of time-series transcriptome data reveals key genes of biological processes.
BMC Bioinformatics, 2015

2014
EndoNet: an information resource about the intercellular signaling network.
BMC Systems Biology, 2014

Quantum Coupled Mutation Finder: Predicting functionally or structurally important sites in proteins using quantum Jensen-Shannon divergence and CUDA programming.
BMC Bioinformatics, 2014

2013
A Discriminative Approach for Unsupervised Clustering of DNA Sequence Motifs.
PLoS Computational Biology, 2013

TFClass: an expandable hierarchical classification of human transcription factors.
Nucleic Acids Research, 2013

Criteria for an updated Classification of Human transcription factor DNA-binding Domains.
J. Bioinformatics and Computational Biology, 2013

Connecting high-dimensional mRNA and miRNA expression data for binary medical classification problems.
Computer Methods and Programs in Biomedicine, 2013

MatrixCatch - a novel tool for the recognition of composite regulatory elements in promoters.
BMC Bioinformatics, 2013

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell.
Algorithms for Molecular Biology, 2013

Inhomogeneous Parsimonious Markov Models.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2013

2012
Using potential master regulator sites and paralogous expansion to construct tissue-specific transcriptional networks.
BMC Systems Biology, 2012

The architecture of the gene regulatory networks of different tissues.
Bioinformatics, 2012

δ-TRIMAX: Extracting Triclusters and Analysing Coregulation in Time Series Gene Expression Data.
Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

Bioinformatik & Bioinformation: Braunschweig spielt eine führende Rolle.
Proceedings of the 40 Jahre Informatik an der Technischen Universität Braunschweig, 1972, 2012

2011
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network.
BMC Systems Biology, 2011

2010
Petri Net Applications in Molecular Biology.
In Silico Biology, 2010

Molecular mechanistic associations of human diseases.
BMC Systems Biology, 2010

2009
An approach to evaluate the topological significance of motifs and other patterns in regulatory networks.
BMC Systems Biology, 2009

2008
EndoNet: an information resource about regulatory networks of cell-to-cell communication.
Nucleic Acids Research, 2008

The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks.
BMC Bioinformatics, 2008

The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation.
Briefings in Bioinformatics, 2008

Building a knowledge base for systems pathology.
Briefings in Bioinformatics, 2008

2007
DEEP - A tool for differential expression effector prediction.
Nucleic Acids Research, 2007

Integrating Pathway Data for Systems Pathology.
In Silico Biology, 2007

2006
Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
Nucleic Acids Research, 2006

EndoNet: an information resource about endocrine networks.
Nucleic Acids Research, 2006

TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes.
Nucleic Acids Research, 2006

TRANSPATH®: an information resource for storing and visualizing signaling pathways and their pathological aberrations.
Nucleic Acids Research, 2006

TiProD: the Tissue-specific Promoter Database.
Nucleic Acids Research, 2006

Beyond microarrays: Finding key transcription factors controlling signal transduction pathways.
BMC Bioinformatics, 2006

Evaluating phylogenetic footprinting for human-rodent comparisons.
Bioinformatics, 2006

Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations.
Bioinformatics, 2006

2005
Composite Module Analyst: A Fitness-Based Tool for Prediction of Transcription Regulation.
Proceedings of the German Conference on Bioinformatics (GCB 2005), Hamburg, 2005

2004
Quo Vadis Bioinformatik, neue Konzepte und Arbeitsbereiche (Quo Vadis Bioinformatics - New Concepts and Areas).
it - Information Technology, 2004

Preface - Third "Ontology Workshop on Ontology and Genomes".
In Silico Biology, 2004

Deriving an ontology for human gene expression sources from the CYTOMER? database on human organs and cell types.
In Silico Biology, 2004

Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods.
Bioinformatics, 2004

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.
Bioinformatics, 2004

Application of Kernel Method to Reveal Subtypes of TF Binding Motifs.
Proceedings of the Regulatory Genomics, 2004

From Composite Patters to Pathways - Prediction of Key Regulators of Gene Expression.
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004

2003
PRODORIC: prokaryotic database of gene regulation.
Nucleic Acids Research, 2003

TRANSFAC®: transcriptional regulation, from patterns to profiles.
Nucleic Acids Research, 2003

TRANSPATH: An integrated database on signal transduction and a tool for array analysis.
Nucleic Acids Research, 2003

MATCHTM: a tool for searching transcription factor binding sites in DNA sequences.
Nucleic Acids Research, 2003

TRANSPATH, TRANSFAC and CYTOMER as starting points for an ontology of regulatory networks.
In Silico Biology, 2003

Preface: The Second Workshop on Ontology and Genome.
In Silico Biology, 2003

Prediction of potential C/EBP/NF-kappaB composite elements using matrix-based search methods.
In Silico Biology, 2003

Composition-sensitive analysis of the human genome for regulatory signals.
In Silico Biology, 2003

Recognition of multiple patterns in unaligned sets of sequences. Comparison of kernel clustering method with other methods.
Proceedings of the German Conference on Bioinformatics, 2003

2002
S/MARt DB: a database on scaffold/matrix attached regions.
Nucleic Acids Research, 2002

TRANSCompel®: a database on composite regulatory elements in eukaryotic genes.
Nucleic Acids Research, 2002

The German Conference on Bioinformatics 2001.
In Silico Biology, 2002

Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

2001
The TRANSFAC system on gene expression regulation.
Nucleic Acids Research, 2001

The TRANSPATH signal transduction database: a knowledge base on signal transduction networks.
Bioinformatics, 2001

-PheGe- a novel concept for in-silico analyses of genotype/phenotype relations.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Modeling the Architecture of Regulatory Networks.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

The integrated TRANSFAC system as a basis for modeling the architecture of gene regulatory networks.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

TRANSFAC®_YEAST.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

ReAlSplice: A database on regulated alternative splicing.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

The SMAD-TGF-beta SignallingNetwork: TRANSFAC meets TRANSPATH.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

ClusterScan: A Tool for Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

TRANSCompel® - a professional database on composite regulatory elements in eukaryotic genes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

TRANSPATH - a database on signal transduction networks.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

MATCHTM - a tool for searching transcription factor binding sites in DNA sequences. Application for the analysis of human chromosomes.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Cytomer: A database on gene expression sources.
Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

2000
TRANSFAC: an integrated system for gene expression regulation.
Nucleic Acids Research, 2000

COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation.
Nucleic Acids Research, 2000

In Memory of Dan Prestridge.
In Silico Biology, 2000

Modeling of Gene Regulatory Network of Cell Cycle Control. Role of E2F Feedback Loops.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

1999
Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms.
Nucleic Acids Research, 1999

Integrated databases and computer systems for studying eukaryotic gene expression.
Bioinformatics, 1999

The Transpath Signal Transduction Database.
Proceedings of the German Conference on Bioinformatics, 1999

PathoDB - a database that combines pathological data with molecular information.
Proceedings of the German Conference on Bioinformatics, 1999

S/MARt DB: A database on chromatin organizing S/MAR regions.
Proceedings of the German Conference on Bioinformatics, 1999

E2F composite units in promoters of cell cycle genes.
Proceedings of the German Conference on Bioinformatics, 1999

CYTOMER® : A database on gene expression sources.
Proceedings of the German Conference on Bioinformatics, 1999

A database framework for mapping expression patterns.
Proceedings of the German Conference on Bioinformatics, 1999

1998
Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL.
Nucleic Acids Research, 1998

ISB: Just another journal?
In Silico Biology, 1998

Transcription regulatory region analysis using signal detection and fuzzy clustering.
Bioinformatics, 1998

GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998

Eine Hierarchie molekularbiologischer Datenbanken zur Beschreibung genregulatorischer Prozesse (Zusammenfassung).
Proceedings of the Data Mining und Data Warehousing, 1998

A hierarchy of databases for modeling gene regulatory mechanisms.
Proceedings of the German Conference on Bioinformatics, 1998

Combinatorial identification of promoters induced upon immune cell activation.
Proceedings of the German Conference on Bioinformatics, 1998

1997
TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.
Nucleic Acids Research, 1997

Identification of the significant conformational features of functional sites in B-DNA.
Proceedings of the German Conference on Bioinformatics, 1997

Transcription regulation regions revealed by Signal detection and fuzzy clusterfng.
Proceedings of the German Conference on Bioinformatics, 1997

1996
TRANSFAC: a database on transcription factors and their DNA binding sites.
Nucleic Acids Research, 1996

Modellierung der Genregulation in Eukaryonten.
it+ti - Informationstechnik und Technische Informatik, 1996

Combining structural analysis of DNA with search routines for the detection of transcription regulatory elements.
Computer Applications in the Biosciences, 1996

Combined Approaches for the Detection of Regulatory Genomic Signals.
Proceedings of the German Conference on Bioinformatics, 1996

TRRD and COMPEL Databases on Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the Bioinformatics, German Conference on Bioinformatics, Leipzig, 1996

TRRD and COMPEL Databases an Transcription Linked to TRANSFAC as Tools for Analysis and Recognition of Regulatory Sequences.
Proceedings of the German Conference on Bioinformatics, 1996

1995
Computer Tool FUNSITE for Analysis of Eukaryotic Regulatory Genomic Sequences.
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

1994
TRANSFAC Retrieval Program: A Network Model Database of Eukaryotic Transcription Regulating Sequences and Proteins.
Journal of Computational Biology, 1994


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