Jaebum Kim

According to our database, Jaebum Kim authored at least 25 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

DLEB: a web application for building deep learning models in biological research.

Suyeon Wy, Daehong Kwon, Kisang Kwon, Jaebum Kim

Nucleic Acids Res., 2022

msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data.

Heesun Kim, Mikang Sim, Na Young Park, Kisang Kwon, Junyoung Kim, Jaebum Kim

BMC Bioinform., 2022

2020

TAMA: improved metagenomic sequence classification through meta-analysis.

Mikang Sim, Jongin Lee, Daehwan Lee, Daehong Kwon, Jaebum Kim

BMC Bioinform., 2020

2019

GMASS: a novel measure for genome assembly structural similarity.

Daehong Kwon, Jongin Lee, Jaebum Kim

BMC Bioinform., 2019

2018

INTERSPIA: a web application for exploring the dynamics of protein-protein interactions among multiple species.

Daehong Kwon, Daehwan Lee, Juyeon Kim, Jongin Lee, Mikang Sim, Jaebum Kim

Nucleic Acids Res., 2018

mySyntenyPortal: an application package to construct websites for synteny block analysis.

Jongin Lee, Daehwan Lee, Mikang Sim, Daehong Kwon, Juyeon Kim, Younhee Ko, Jaebum Kim

BMC Bioinform., 2018

2017

Synteny Explorer: An Interactive Visualization Application for Teaching Genome Evolution.

Chris Bryan, Gregory Guterman, Kwan-Liu Ma, Harris A. Lewin, Denis M. Larkin, Jaebum Kim, Jian Ma, Marta Farre

IEEE Trans. Vis. Comput. Graph., 2017

The effect of reference species on reference-guided genome assembly.

Juyeon Kim, Daehwan Lee, Mikang Sim, Jongin Lee, Jaebum Kim

Proceedings of the 8th International Conference on Computational Systems-Biology and Bioinformatics, 2017

2016

Synteny Portal: a web-based application portal for synteny block analysis.

Jongin Lee, Woonyoung Hong, Minah Cho, Mikang Sim, Daehwan Lee, Younhee Ko, Jaebum Kim

Nucleic Acids Res., 2016

2014

PSAR-Align: improving multiple sequence alignment using probabilistic sampling.

Jaebum Kim, Jian Ma

Bioinform., 2014

Estimating the number of species in metagenomes by clustering next-generation read sequences.

Ho-Sik Seok, Woonyoung Hong, Jaebum Kim

Proceedings of the International Conference on Big Data and Smart Computing, BIGCOMP 2014, 2014

2013

Reference-assisted chromosome assembly.

Jaebum Kim, Denis M. Larkin, Qingle Cai, Asan, Yongfen Zhang, Ri-Li Ge, Loretta Auvil, Boris Capitanu, Guojie Zhang, Harris A. Lewin, Jian Ma

Proc. Natl. Acad. Sci. USA, 2013

2011

PSAR: Measuring Multiple Sequence Alignment Reliability by Probabilistic Sampling - (Extended Abstract).

Jaebum Kim, Jian Ma

Proceedings of the Research in Computational Molecular Biology, 2011

2010

Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences

Jaebum Kim

PhD thesis, 2010

Functional Characterization of Transcription Factor Motifs Using Cross-species Comparison across Large Evolutionary Distances.

Jaebum Kim, Ryan Cunningham, Brian James, Stefan Wyder, Joshua D. Gibson, Oliver Niehuis, Evgeny M. Zdobnov, Hugh M. Robertson, Gene E. Robinson, John H. Werren, Saurabh Sinha

PLoS Comput. Biol., 2010

Towards realistic benchmarks for multiple alignments of non-coding sequences.

Jaebum Kim, Saurabh Sinha

BMC Bioinform., 2010

2008

PerRank: Personalized Rank Retrieval with Categorical and Numerical Attributes.

Sangkyum Kim, Jaebum Kim, Younhee Ko, Seung-won Hwang, Jiawei Han

Proceedings of the Ninth International Conference on Web-Age Information Management, 2008

A fast two-pass HDL simulation with on-demand dump.

Kyuho Shim, Young-Rae Cho, Namdo Kim, Hyuncheol Baik, Kyungkuk Kim, Dusung Kim, Jaebum Kim, Byeongun Min, Kyumyung Choi, Maciej J. Ciesielski, Seiyang Yang

Proceedings of the 13th Asia South Pacific Design Automation Conference, 2008

2007

Modified enhanced max-log-maximum a posteriori algorithm using variable scaling factor.

Jaebum Kim, J. Kim, Hyuncheol Park, B. Kim, S. Park

IET Commun., 2007

Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment.

Jaebum Kim, Saurabh Sinha

Bioinform., 2007

2006

A Search Ant and Labor Ant Algorithm for Clustering Data.

Heesang Lee, Gyuseok Shim, Yun Bae Kim, Jinsoo Park, Jaebum Kim

Proceedings of the Ant Colony Optimization and Swarm Intelligence, 2006

2005

Corrections to "A new enhanced coding scheme for robust bit-stream of ATSC DTV".

Jaebum Kim, Namshik Kim, Kumran Ji, Seungwon Kim, Hyuncheol Park

IEEE Trans. Consumer Electron., 2005

A new enhanced coding scheme for robust bit-stream of ATSC DTV.

Jaebum Kim, Namshik Kim, Kumran Ji, Seungwon Kim, Hyuncheol Park

IEEE Trans. Consumer Electron., 2005

2004

Empirical Analysis for Individual Behavior of Impatient Customers in a Call Center.

Yun Bae Kim, Chang Hun Lee, Jaebum Kim, Gyutai Kim, Jong Seon Hong

Proceedings of the Systems Modeling and Simulation: Theory and Applications, 2004

2002

Catalog Integration for Electronic Commerce through Category-Hierarchy Merging Technique.

Dongkyu Kim, Jaebum Kim, Sang-goo Lee

Proceedings of the 12th International Workshop on Research Issues in Data Engineering: Engineering E-Commerce/E-Business Systems, 2002