Evgeny M. Zdobnov

According to our database1, Evgeny M. Zdobnov authored at least 29 papers between 2000 and 2021.

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Bibliography

2021
OrthoDB in 2020: evolutionary and functional annotations of orthologs.
Nucleic Acids Res., 2021

2020
ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
BMC Bioinform., 2020

Phigaro: high-throughput prophage sequence annotation.
Bioinform., 2020

2019
OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs.
Nucleic Acids Res., 2019

2017
OrthoDB v9.1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs.
Nucleic Acids Res., 2017

Understanding key features of bacterial restriction-modification systems through quantitative modeling.
BMC Syst. Biol., 2017

2016
CEGA - a catalog of conserved elements from genomic alignments.
Nucleic Acids Res., 2016

2015
OrthoDB v8: update of the hierarchical catalog of orthologs and the underlying free software.
Nucleic Acids Res., 2015

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Bioinform., 2015

2014
Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.
Nucleic Acids Res., 2014

2013
OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs.
Nucleic Acids Res., 2013

miRmap web: comprehensive microRNA target prediction online.
Nucleic Acids Res., 2013

2011
OrthoDB: the hierarchical catalog of eukaryotic orthologs in 2011.
Nucleic Acids Res., 2011

2010
Functional Characterization of Transcription Factor Motifs Using Cross-species Comparison across Large Evolutionary Distances.
PLoS Comput. Biol., 2010

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell.
Bioinform., 2010

2009
miROrtho: computational survey of microRNA genes.
Nucleic Acids Res., 2009

2008
OrthoDB: the hierarchical catalog of eukaryotic orthologs.
Nucleic Acids Res., 2008

2007
VectorBase: a home for invertebrate vectors of human pathogens.
Nucleic Acids Res., 2007

2003
The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Res., 2003

2002
The EBI SRS server-new features.
Bioinform., 2002

The EBI SRS server-recent developments.
Bioinform., 2002

Interactive InterPro-based comparisons of proteins in whole genomes.
Bioinform., 2002

Bioinformatics: Using the Molecular Biology Data.
Proceedings of the Essentials of Genomics and Bioinformatics, 2002

2001
CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins.
Nucleic Acids Res., 2001

Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes.
Nucleic Acids Res., 2001

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001

InterProScan - an integration platform for the signature-recognition methods in InterPro.
Bioinform., 2001

2000
InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000

Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes.
Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000


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