James F. Brinkley

According to our database1, James F. Brinkley authored at least 78 papers between 1985 and 2017.

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Bibliography

2017
Cross-species Mapping of Human and Mouse Craniofacial Structures.
Proceedings of the AMIA 2017, 2017

2016
From frames to OWL2: Converting the Foundational Model of Anatomy.
Artificial Intelligence in Medicine, 2016

Multi-species Ontologies of the Craniofacial Musculoskeletal System.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
Converting the Foundational Model of Anatomy to OWL2.
Proceedings of the AMIA 2015, 2015

2014
Neuroanatomical domain of the foundational model of anatomy ontology.
J. Biomedical Semantics, 2014

2013
Human Development Domain of the Ontology of Craniofacial Development and Malformation.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

2012
Ontological labels for automated location of anatomical shape differences.
Journal of Biomedical Informatics, 2012

A Query Integrator and Manager for the Query Web.
Journal of Biomedical Informatics, 2012

A Dataflow Graph Transformation Language and Query Rewriting System for RDF Ontologies.
Proceedings of the Scientific and Statistical Database Management, 2012

Ontology-Based Federated Data Access to Human Studies Information.
Proceedings of the AMIA 2012, 2012

2011
vSPARQL: A view definition language for the semantic web.
Journal of Biomedical Informatics, 2011

A partnership approach for Electronic Data Capture in small-scale clinical trials.
Journal of Biomedical Informatics, 2011

Ontological Labels for Automated Location of Left Ventricular Remodeling.
Proceedings of the 5th IEEE International Conference on Semantic Computing (ICSC 2011), 2011

The Foundational Model of Neuroanatomy Ontology: An Ontology Framework to Support Neuroanatomical Data Integration.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010
Application of neuroanatomical ontologies for neuroimaging data annotation.
Front. Neuroinform., 2010

2009
Content-specific auditing of a large scale anatomy ontology.
Journal of Biomedical Informatics, 2009

Distributed XQuery-based integration and visualization of multimodality brain mapping data.
Front. Neuroinform., 2009

A similarity retrieval method for functional magnetic resonance imaging (fMRI) statistical maps.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

An independent component analysis based tool for exploring functional connections in the brain.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

2008
Generating Application Ontologies from Reference Ontologies.
Proceedings of the AMIA 2008, 2008

FMA-RadLex: An Application Ontology of Radiological Anatomy derived from the Foundational Model of Anatomy Reference Ontology.
Proceedings of the AMIA 2008, 2008

Regular Paths in SparQL: Querying the NCI Thesaurus.
Proceedings of the AMIA 2008, 2008

2007
Unobtrusive integration of data management with fMRI analysis.
Neuroinformatics, 2007

Research Paper: Issues in Biomedical Research Data Management and Analysis: Needs and Barriers.
JAMIA, 2007

MindSeer: a portable and extensible tool for visualization of structural and functional neuroimaging data.
BMC Bioinformatics, 2007

A Model Browser for Biosimulation.
Proceedings of the AMIA 2007, 2007

XGI: A Graphical Interface for XQuery Creation.
Proceedings of the AMIA 2007, 2007

2006
Intelligent Web-based Whole Body Visualization for Anatomy Education.
Proceedings of the AMIA 2006, 2006

Model Driven Laboratory Information Management Systems.
Proceedings of the AMIA 2006, 2006

Customizable Electronic Laboratory Online (CELO): A Web-based Data Management System Builder for Biomedical Research Laboratories.
Proceedings of the AMIA 2006, 2006

Custom Views of Reference Ontologies.
Proceedings of the AMIA 2006, 2006

A framework for using reference ontologies as a foundation for the semantic web.
Proceedings of the AMIA 2006, 2006

2005
Application of Information Technology: Processes and Problems in the Formative Evaluation of an Interface to the Foundational Model of Anatomy Knowledge Base.
JAMIA, 2005

Application of Information Technology: Server-based Approach to Web Visualization of Integrated Three-dimensional Brain Imaging Data.
JAMIA, 2005

A Framework for XML-Based Integration of Data, Visualization and Analysis in a Biomedical Domain.
Proceedings of the Database and XML Technologies, 2005

Knowledge-Based, Interactive, Custom Anatomical Scene Creation for Medical Education: The Biolucida System.
Proceedings of the AMIA 2005, 2005

BioMediator Data Integration: Beyond Genomics to Neuroscience Data.
Proceedings of the AMIA 2005, 2005

Automatic XQuery Generation and Generalized Visualization for an XML Interface to a Relational Database.
Proceedings of the AMIA 2005, 2005

A Pilot Bridging Data Integration and Analytics: BioMediator and R?
Proceedings of the AMIA 2005, 2005

2004
A Relation-Centric Query Engine for the Foundational Model of Anatomy.
Proceedings of the MEDINFO 2004, 2004

2003
Towards effective and rewarding data sharing.
Neuroinformatics, 2003

OQAFMA Querying Agent for the Foundational Model of Anatomy: a prototype for providing flexible and efficient access to large semantic networks.
Journal of Biomedical Informatics, 2003

Dynamic XML-Based Exchange of Relational Data: Application to the Human Brain Project.
Proceedings of the AMIA 2003, 2003

The Evolving Neuroanatomical Component of the Foundational Model of Anatomy.
Proceedings of the AMIA 2003, 2003

A Prototype Natural Language Interface to a Large Complex Knowledge Base, the Foundational Model of Anatomy.
Proceedings of the AMIA 2003, 2003

Efficient Web-Based Navigation of the Foundational Model of Anatomy.
Proceedings of the AMIA 2003, 2003

2002
Application of Information Technology: WIRM: An Open Source Toolkit for Building Biomedical Web Applications.
JAMIA, 2002

A Declarative Query Interface for Large Semantic Networks.
Proceedings of the AMIA 2002, 2002

An Online Image Management System for Anatomy Teaching.
Proceedings of the AMIA 2002, 2002

2001
Server-based approach to web visualization of integrated 3-D medical image data.
Proceedings of the AMIA 2001, 2001

Representation of Structural Relationships in the Foundational Model of Anatomy.
Proceedings of the AMIA 2001, 2001

Foundational model of neuroanatomy: implications for the Human Brain Project.
Proceedings of the AMIA 2001, 2001

Enabling clinicians, researchers, and educators to build custom web-based biomedical information systems.
Proceedings of the AMIA 2001, 2001

2000
A Personal Annotated Image Server.
Proceedings of the AMIA 2000, 2000

Requirements of a Web-based experiment management system.
Proceedings of the AMIA 2000, 2000

1999
Design of an Anatomy Information System.
IEEE Computer Graphics and Applications, 1999

Semi-automatic scene generation using the Digital Anatomist Foundational Model.
Proceedings of the AMIA 1999, 1999

Integration and visualization of multimodality brain data for language mapping.
Proceedings of the AMIA 1999, 1999

A Portable Image Annotation Tool for Web-based Anatomy Atlases.
Proceedings of the AMIA 1999, 1999

Design features of on-line anatomy information resources: a comparison with the Digital Anatomist.
Proceedings of the AMIA 1999, 1999

Anatomical information in radiation treatment planning.
Proceedings of the AMIA 1999, 1999

Representing the Digital Anatomist Foundational Model as a Protege Ontology.
Proceedings of the AMIA 1999, 1999

1998
Research Paper: Motivation and Organizational Principles for Anatomical Knowledge Representation: The Digital Anatomist Symbolic Knowledge Base.
JAMIA, 1998

Dynamic 3-D Scene Navigation in Web-Based Anatomy Atlases.
Proceedings of the AMIA 1998, 1998

The digital anatomist foundational model: principles for defining and structuring its concept domain.
Proceedings of the AMIA 1998, 1998

Query-by-Context: A Framework for Modeling and Navigating Multimedia Research.
Proceedings of the AMIA 1998, 1998

Incorporating constraint-based shape models into an interactive system for functional brain mapping.
Proceedings of the AMIA 1998, 1998

Requirements for an on-line knowledge-based anatomy information system.
Proceedings of the AMIA 1998, 1998

1997
Slisp: A Flexible Software Toolkit for Hybrid, Embedded and Distributed Applications.
Softw., Pract. Exper., 1997

Synthesis of Research: The Digital Anatomist Distributed Framework and Its Applications to Knowledge-based Medical Imaging.
JAMIA, 1997

Evaluation of a visualization-based approach to functional brain mapping.
Proceedings of the AMIA 1997, 1997

Managing medical research data with a Web-Interfacing Repository Manager.
Proceedings of the AMIA 1997, 1997

Using 3-D shape models to guide segmentation of MR brain images.
Proceedings of the AMIA 1997, 1997

1996
A Visual Database Environment for Scientific Research.
J. Vis. Lang. Comput., 1996

A metric for quantifying response time in a browser application.
IEEE Trans. Systems, Man, and Cybernetics, Part A, 1996

1988
Heuristic refinement method for the derivation of protein solution structures: validation on cytochrome b562.
Journal of Chemical Information and Computer Sciences, 1988

1986
PROTEAN: Deriving Protein Structure from Constraints.
Proceedings of the 5th National Conference on Artificial Intelligence. Philadelphia, 1986

1985
Knowledge-Driven Ultrasonic Three-Dimensional Organ Modeling.
IEEE Trans. Pattern Anal. Mach. Intell., 1985


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