Maryann E. Martone

According to our database1, Maryann E. Martone authored at least 65 papers between 2000 and 2017.

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Bibliography

2017
Assessing value of biomedical digital repositories.
PeerJ PrePrints, 2017

2016
The Resource Identification Initiative: A Cultural Shift in Publishing.
Neuroinformatics, 2016

2015
Early experiences in developing and managing the neuroscience gateway.
Concurrency and Computation: Practice and Experience, 2015

2014
Neuroscience Information Framework (NIF).
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Cell Centered Database.
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Re-envisioning the business of information: Policies, practices and procedures.
Inf. Services and Use, 2014

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies.
Front. Neuroinform., 2014

Neuroanatomical domain of the foundational model of anatomy ontology.
J. Biomedical Semantics, 2014

Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks.
J. Biomedical Semantics, 2014

Automatic detection of mitochondria from electron microscope tomography images: a curve fitting approach.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

2013
Connecting Connectomes.
Neuroinformatics, 2013

The cell: an image library-CCDB: a curated repository of microscopy data.
Nucleic Acids Research, 2013

A knowledge based approach to matching human neurodegenerative disease and animal models.
Front. Neuroinform., 2013

NeuroLex.org: an online framework for neuroscience knowledge.
Front. Neuroinform., 2013

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments.
J. Biomedical Semantics, 2013

A neuroscience gateway: software and implementation.
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013

Semantic query reformulation: the NIF experience.
Proceedings of the Conference on Scientific and Statistical Database Management, 2013

Introducing The Neuroscience Gateway.
Proceedings of the 5th International Workshop on Science Gateways, 2013

2012
Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics.
Proceedings of the International Conference on Computational Science, 2012

An ontological approach to describing neurons and their relationships.
Front. Neuroinform., 2012

Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets.
BMC Bioinformatics, 2012

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.
Database, 2012

Detecting and using document structure in scientific text.
Proceedings of the ACM International Health Informatics Symposium, 2012

Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience.
Proceedings of the Formal Ontology in Information Systems, 2012

2011
Digital Atlasing and Standardization in the Mouse Brain.
PLoS Computational Biology, 2011


NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010
Dimensionality reduction on multi-dimensional transfer functions for multi-channel volume data sets.
Information Visualization, 2010

Application of neuroanatomical ontologies for neuroimaging data annotation.
Front. Neuroinform., 2010

Towards an ontology for psychosis.
Cognitive Systems Research, 2010

Multichannel transfer function with dimensionality reduction.
Proceedings of the Visualization and Data Analysis, 2010

2009
NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

Ontology driven data integration for autism research.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

2008
Large-Scale Biomedical Image Analysis in Grid Environments.
IEEE Trans. Information Technology in Biomedicine, 2008

Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework.
Neuroinformatics, 2008

The NIF LinkOut Broker: A Web Resource to Facilitate Federated Data Integration using NCBI Identifiers.
Neuroinformatics, 2008

Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF).
Neuroinformatics, 2008

The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience.
Neuroinformatics, 2008

The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience.
Neuroinformatics, 2008

2007
A formal ontology of subcellular neuroanatomy.
Front. Neuroinform., 2007

Bridging the resolution gap: superimposition of multiple multi-channel volumes.
Proceedings of the 34. International Conference on Computer Graphics and Interactive Techniques, 2007

Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology.
Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy.
Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

Shape Priors by Kernel Density Modeling of PCA Residual Structure.
Proceedings of the International Conference on Image Processing, 2007


Toward an Ontological Database for Subcellular Neuroanatomy.
Proceedings of the Advances in Conceptual Modeling - Foundations and Applications, 2007

2006
High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders.
Neuroinformatics, 2006

Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter.
Future Generation Comp. Syst., 2006

OntoQuest: Exploring Ontological Data Made Easy.
Proceedings of the 32nd International Conference on Very Large Data Bases, 2006

Imaging and visual analysis - Large image correction and warping in a cluster environment.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

Semantically Based Data Integration Environment for Biomedical Research.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005
Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease.
Proceedings of the From Grid to Healthgrid, 2005

2004
Integrating Brain Data Spatially: Spatial Data Infrastructure and Atlas Environment for Online Federation and Analysis of Brain Images.
Proceedings of the 15th International Workshop on Database and Expert Systems Applications (DEXA 2004), with CD-ROM, 30 August, 2004

2003
Towards a formalization of disease-specific ontologies for neuroinformatics.
Neural Networks, 2003

The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy.
Neuroinformatics, 2003

The Telescience Portal for advanced tomography applications.
J. Parallel Distrib. Comput., 2003

A Practical Approach for Microscopy Imaging Data Management (MIDM) in Neuroscience.
Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), 2003

BIRN-M: A Semantic Mediator for Solving Real-World Neuroscience Problems.
Proceedings of the 2003 ACM SIGMOD International Conference on Management of Data, 2003

2002
Registering Scientific Information Sources for Semantic Mediation.
Proceedings of the Conceptual Modeling, 2002

Navigating Virtual Information Sources with Know-ME.
Proceedings of the Advances in Database Technology, 2002

A System for Managing Alternate Models in Model-Based Mediation.
Proceedings of the Advances in Databases, 19th British National Conference on Databases, 2002

2001
Model-Based Mediation with Domain Maps.
Proceedings of the 17th International Conference on Data Engineering, 2001

An Extensible Model-Based Mediatior System with Domain Maps.
Proceedings of the ICDE 2001, Demo Session Abstracts (Informal Proceedings), 2001

2000
Model-Based Information Integration in a Neuroscience Mediator System.
Proceedings of the VLDB 2000, 2000

Knowledge-Based Integration of Neuroscience Data Sources.
Proceedings of the 12th International Conference on Scientific and Statistical Database Management, 2000


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