Maryann E. Martone

Orcid: 0000-0002-8406-3871

  • University of California San Diego, Center for Research in Biological Systems, La Jolla, CA, USA

According to our database1, Maryann E. Martone authored at least 82 papers between 2000 and 2024.

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PhD thesis 


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A Maturity Model for Operations in Neuroscience Research.
CoRR, 2024

The past, present and future of neuroscience data sharing: a perspective on the state of practices and infrastructure for FAIR.
Frontiers Neuroinformatics, March, 2023

The Antibody Registry: ten years of registering antibodies.
Nucleic Acids Res., January, 2023

Promoting FAIR Data Through Community-driven Agile Design: the Open Data Commons for Spinal Cord Injury (
Neuroinformatics, 2022

Is Neuroscience FAIR? A Call for Collaborative Standardisation of Neuroscience Data.
Neuroinformatics, 2022

The Neuron Phenotype Ontology: A FAIR Approach to Proposing and Classifying Neuronal Types.
Neuroinformatics, 2022

Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Neuroinformatics, 2022

A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Neuroinformatics, 2022

Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project.
Frontiers Neuroinformatics, 2022

Antibody Watch: Text mining antibody specificity from the literature.
PLoS Comput. Biol., 2021

Software and Data Citation.
Comput. Sci. Eng., 2020

Comparing the Use of Research Resource Identifiers and Natural Language Processing for Citation of Databases, Software, and Other Digital Artifacts.
Comput. Sci. Eng., 2020

Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging.
Frontiers Neuroinformatics, 2019

How BIDs and BIDs validator has informed the data aggregation needs of the Stimulating Peripheral Activity to Relieve Conditions, SPARC, consortium.
Proceedings of Workshop on Research Objects (RO2019), 2019

Research Resource IDentifiers for Key Biological Resources.
Proceedings of Workshop on Research Objects (RO2018), 2018

Assessing value of biomedical digital repositories.
PeerJ Prepr., 2017

The Resource Identification Initiative: A Cultural Shift in Publishing.
Neuroinformatics, 2016

Early experiences in developing and managing the neuroscience gateway.
Concurr. Comput. Pract. Exp., 2015

Neuroscience Information Framework (NIF).
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Cell Centered Database.
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Re-envisioning the business of information: Policies, practices and procedures.
Inf. Serv. Use, 2014

Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies.
Frontiers Neuroinformatics, 2014

Neuroanatomical domain of the foundational model of anatomy ontology.
J. Biomed. Semant., 2014

Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks.
J. Biomed. Semant., 2014

Automatic detection of mitochondria from electron microscope tomography images: a curve fitting approach.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Connecting Connectomes.
Neuroinformatics, 2013

The cell: an image library-CCDB: a curated repository of microscopy data.
Nucleic Acids Res., 2013

A knowledge based approach to matching human neurodegenerative disease and animal models.
Frontiers Neuroinformatics, 2013 an online framework for neuroscience knowledge.
Frontiers Neuroinformatics, 2013

The Gene Ontology (GO) Cellular Component Ontology: integration with SAO (Subcellular Anatomy Ontology) and other recent developments.
J. Biomed. Semant., 2013

A neuroscience gateway: software and implementation.
Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013

Semantic query reformulation: the NIF experience.
Proceedings of the Conference on Scientific and Statistical Database Management, 2013

Introducing The Neuroscience Gateway.
Proceedings of the 5th International Workshop on Science Gateways, 2013

Prototype of Kepler Processing Workflows For Microscopy And Neuroinformatics.
Proceedings of the International Conference on Computational Science, 2012

An ontological approach to describing neurons and their relationships.
Frontiers Neuroinformatics, 2012

Method: automatic segmentation of mitochondria utilizing patch classification, contour pair classification, and automatically seeded level sets.
BMC Bioinform., 2012

A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.
Database J. Biol. Databases Curation, 2012

Detecting and using document structure in scientific text.
Proceedings of the ACM International Health Informatics Symposium, 2012

Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience.
Proceedings of the Formal Ontology in Information Systems, 2012

Digital Atlasing and Standardization in the Mouse Brain.
PLoS Comput. Biol., 2011

NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Dimensionality reduction on multi-dimensional transfer functions for multi-channel volume data sets.
Inf. Vis., 2010

Application of neuroanatomical ontologies for neuroimaging data annotation.
Frontiers Neuroinformatics, 2010

Towards an ontology for psychosis.
Cogn. Syst. Res., 2010

Multichannel transfer function with dimensionality reduction.
Proceedings of the Visualization and Data Analysis, 2010

2009 - A semantic wiki for neuroinformatics based on the NIF Standard Ontology.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

Ontology driven data integration for autism research.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data.
Proceedings of the Anatomy Ontologies for Bioinformatics, Principles and Practice, 2008

Large-Scale Biomedical Image Analysis in Grid Environments.
IEEE Trans. Inf. Technol. Biomed., 2008

Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework.
Neuroinformatics, 2008

The NIF LinkOut Broker: A Web Resource to Facilitate Federated Data Integration using NCBI Identifiers.
Neuroinformatics, 2008

Federated Access to Heterogeneous Information Resources in the Neuroscience Information Framework (NIF).
Neuroinformatics, 2008

The Neuroscience Information Framework: A Data and Knowledge Environment for Neuroscience.
Neuroinformatics, 2008

The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience.
Neuroinformatics, 2008

A formal ontology of subcellular neuroanatomy.
Frontiers Neuroinformatics, 2007

Bridging the resolution gap: superimposition of multiple multi-channel volumes.
Proceedings of the International Conference on Computer Graphics and Interactive Techniques, 2007

Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology.
Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy.
Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

Shape Priors by Kernel Density Modeling of PCA Residual Structure.
Proceedings of the International Conference on Image Processing, 2007

Toward an Ontological Database for Subcellular Neuroanatomy.
Proceedings of the Advances in Conceptual Modeling - Foundations and Applications, 2007

High-resolution large-scale mosaic imaging using multiphoton microscopy to characterize transgenic mouse models of human neurological disorders.
Neuroinformatics, 2006

Real-time multi-scale brain data acquisition, assembly, and analysis using an end-to-end OptIPuter.
Future Gener. Comput. Syst., 2006

OntoQuest: Exploring Ontological Data Made Easy.
Proceedings of the 32nd International Conference on Very Large Data Bases, 2006

Imaging and visual analysis - Large image correction and warping in a cluster environment.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

Semantically Based Data Integration Environment for Biomedical Research.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease.
Proceedings of the From Grid to Healthgrid, 2005

Integrating Brain Data Spatially: Spatial Data Infrastructure and Atlas Environment for Online Federation and Analysis of Brain Images.
Proceedings of the 15th International Workshop on Database and Expert Systems Applications (DEXA 2004), with CD-ROM, 30 August, 2004

Towards a formalization of disease-specific ontologies for neuroinformatics.
Neural Networks, 2003

The cell-centered database - A database for multiscale structural and protein localization data from light and electron microscopy.
Neuroinformatics, 2003

The Telescience Portal for advanced tomography applications.
J. Parallel Distributed Comput., 2003

A Practical Approach for Microscopy Imaging Data Management (MIDM) in Neuroscience.
Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), 2003

BIRN-M: A Semantic Mediator for Solving Real-World Neuroscience Problems.
Proceedings of the 2003 ACM SIGMOD International Conference on Management of Data, 2003

A Model-Based Mediator System for Scientific Data Management.
Proceedings of the Bioinformatics, 2003

Registering Scientific Information Sources for Semantic Mediation.
Proceedings of the Conceptual Modeling, 2002

Navigating Virtual Information Sources with Know-ME.
Proceedings of the Advances in Database Technology, 2002

A System for Managing Alternate Models in Model-Based Mediation.
Proceedings of the Advances in Databases, 19th British National Conference on Databases, 2002

Model-Based Mediation with Domain Maps.
Proceedings of the 17th International Conference on Data Engineering, 2001

An Extensible Model-Based Mediatior System with Domain Maps.
Proceedings of the ICDE 2001, Demo Session Abstracts (Informal Proceedings), 2001

Model-Based Information Integration in a Neuroscience Mediator System.
Proceedings of the VLDB 2000, 2000

Knowledge-Based Integration of Neuroscience Data Sources.
Proceedings of the 12th International Conference on Scientific and Statistical Database Management, 2000