Jean-Loup Faulon

Orcid: 0000-0003-4274-2953

According to our database1, Jean-Loup Faulon authored at least 36 papers between 1992 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2019
RetroRules: a database of reaction rules for engineering biology.
Nucleic Acids Res., 2019

2018
PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts.
Bioinform., 2018

Selenzyme: enzyme selection tool for pathway design.
Bioinform., 2018

2017
Molecular structures enumeration and virtual screening in the chemical space with RetroPath2.0.
J. Cheminformatics, 2017

2016
SensiPath: computer-aided design of sensing-enabling metabolic pathways.
Nucleic Acids Res., 2016

2014
PrecisePrimer: an easy-to-use web server for designing PCR primers for DNA library cloning and DNA shuffling.
Nucleic Acids Res., 2014

XTMS: pathway design in an eXTended metabolic space.
Nucleic Acids Res., 2014

XTMS in Action: Retrosynthetic Design in the Extended Metabolic Space of Heterologous Pathways for High-Value Compounds.
Proceedings of the Computational Methods in Systems Biology, 2014

2013
Stereo Signature Molecular Descriptor.
J. Chem. Inf. Model., 2013

PMG: Multi-core Metabolite Identification.
Proceedings of the fourth International Workshop on Interactions between Computer Science and Biology, 2013

Statistical ensemble analysis for simulating extrinsic noise-driven response in NF-κ.
BMC Syst. Biol., 2013

2012
OMG: open molecule generator.
J. Cheminformatics, 2012

Cheminformatics.
Commun. ACM, 2012

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms.
BMC Syst. Biol., 2012

2011
A retrosynthetic biology approach to metabolic pathway design for therapeutic production.
BMC Syst. Biol., 2011

2010
Molecular signatures-based prediction of enzyme promiscuity.
Bioinform., 2010

Disparate data fusion for protein phosphorylation prediction.
Ann. Oper. Res., 2010

2008
Genome scale enzyme-metabolite and drug-target interaction predictions using the signature molecular descriptor.
Bioinform., 2008

2007
Boolean dynamics of genetic regulatory networks inferred from microarray time series data.
Bioinform., 2007

2006
Designing Novel Polymers with Targeted Properties Using the Signature Molecular Descriptor.
J. Chem. Inf. Model., 2006

2005
Reverse engineering chemical structures from molecular descriptors: how many solutions?
J. Comput. Aided Mol. Des., 2005

A deterministic algorithm for constrained enumeration of transmembrane protein folds.
Comput. Biol. Chem., 2005

Predicting protein-protein interactions using signature products.
Bioinform., 2005

Inverse Design of Large Molecules using Linear Diophantine Equations.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004
The Signature Molecular Descriptor. 4. Canonizing Molecules Using Extended Valence Sequences.
J. Chem. Inf. Model., 2004

Inferring Genetic Networks from Microarray Data.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

Dynamical Robustness in Gene Regulatory Networks.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
The Signature Molecular Descriptor. 1. Using Extended Valence Sequences in QSAR and QSPR Studies.
J. Chem. Inf. Comput. Sci., 2003

The Signature Molecular Descriptor. 2. Enumerating Molecules from Their Extended Valence Sequences.
J. Chem. Inf. Comput. Sci., 2003

2001
Stochastic Generator of Chemical Structure. 3. Reaction Network Generation.
J. Chem. Inf. Comput. Sci., 2001

Stochastic generator of chemical structure. 4. Building polymeric systems with specified properties.
J. Comput. Chem., 2001

1998
Isomorphism, Automorphism Partitioning, and Canonical Labeling Can Be Solved in Polynomial-Time for Molecular Graphs.
J. Chem. Inf. Comput. Sci., 1998

1997
Massively Parallel Simulations of Diffusion in Dense Polymeric Structures.
Proceedings of the ACM/IEEE Conference on Supercomputing, 1997

1996
Stochastic Generator of Chemical Structure, 2. Using Simulated Annealing To Search the Space of Constitutional Isomers.
J. Chem. Inf. Comput. Sci., 1996

1994
Stochastic Generator of Chemical Structure. 1. Application to the Structure Elucidation of Large Molecules.
J. Chem. Inf. Comput. Sci., 1994

1992
On using graph-equivalent classes for the structure elucidation of large molecules.
J. Chem. Inf. Comput. Sci., 1992


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