Janna Hastings

Affiliations:
  • University of Zurich, Faculty of Medicine, Switzerland
  • University of St. Gallen, School of Medicine, Switzerland


According to our database1, Janna Hastings authored at least 70 papers between 2008 and 2023.

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Bibliography

2023
Neuro-Symbolic Semantic Learning for Chemistry.
Proceedings of the Compendium of Neurosymbolic Artificial Intelligence, 2023

Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities.
TGDK, 2023

Applied ontology: Where are we now and where are we going?
Appl. Ontology, 2023

Ontology Pre-training for Poison Prediction.
Proceedings of the KI 2023: Advances in Artificial Intelligence, 2023

Human Factors Influencing the Experience of Healthcare Professionals Using Digital Tools.
Proceedings of the Healthcare Transformation with Informatics and Artificial Intelligence, 2023

2022
When one Logic is Not Enough: Integrating First-order Annotations in OWL Ontologies.
CoRR, 2022

Ontology development is consensus creation, not (merely) representation.
Appl. Ontology, 2022

ESC-Rules: Explainable, Semantically Constrained Rule Sets.
Proceedings of the 16th International Workshop on Neural-Symbolic Learning and Reasoning as part of the 2nd International Joint Conference on Learning & Reasoning (IJCLR 2022), 2022

2021
Learning chemistry: exploring the suitability of machine learning for the task of structure-based chemical ontology classification.
J. Cheminformatics, 2021

Why and how to engage expert stakeholders in ontology development: insights from social and behavioural sciences.
J. Biomed. Semant., 2021

Scientific Ontologies, Digital Curation and the Learning Knowledge Ecosystem.
Proceedings of the Conference on Digital Curation Technologies (Qurator 2021), Berlin, Germany, February 8th - to, 2021

FOWL - An OWL to FOL Translator.
Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

Ontologies for the Behavioural and Social Sciences: Opportunities and Challenges.
Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

Automated and Explainable Ontology Extension based on Deep Learning: A Case Study in the Chemical Domain.
Proceedings of the Workshop on Data meets Applied Ontologies in Explainable AI (DAO-XAI 2021) part of Bratislava Knowledge September (BAKS 2021), 2021

Mental Functioning Ontologies.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2019
The Literary Theme Ontology for Media Annotation and Information Retrieval.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

Representing Literary Characters and their Attributes in an Ontology.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

2016
ChEBI in 2016: Improved services and an expanding collection of metabolites.
Nucleic Acids Res., 2016

libChEBI: an API for accessing the ChEBI database.
J. Cheminformatics, 2016

ClassyFire: automated chemical classification with a comprehensive, computable taxonomy.
J. Cheminformatics, 2016

2015
DINTO: Using OWL Ontologies and SWRL Rules to Infer Drug-Drug Interactions and Their Mechanisms.
J. Chem. Inf. Model., 2015

PubChemRDF: towards the semantic annotation of PubChem compound and substance databases.
J. Cheminformatics, 2015

Application of Domain Ontologies to Natural Language Processing: A Case Study for Drug-Drug Interactions.
Int. J. Inf. Retr. Res., 2015

Digital Scholarship and Open Science in Psychology and the Behavioral Sciences (Dagstuhl Perpectives Workshop 15302).
Dagstuhl Reports, 2015

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology.
BMC Bioinform., 2015

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment.
J. Biomed. Semant., 2015

ChEBI for systems biology and metabolic modelling.
Proceedings of the International Conference on Biomedical Ontology, 2015

2014
Interdisciplinary perspectives on the development, integration, and application of cognitive ontologies.
Frontiers Neuroinformatics, 2014

Evaluating the Emotion Ontology through use in the self-reporting of emotional responses at an academic conference.
J. Biomed. Semant., 2014

The first eNanoMapper prototype: A substance database to support safe-by-design.
Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013
MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data.
Nucleic Acids Res., 2013

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.
Nucleic Acids Res., 2013

The ChEMBL database as linked open data.
J. Cheminformatics, 2013

Expanding natural product chemistry resources at the EBI.
J. Cheminformatics, 2013

FMCS: a novel algorithm for the multiple MCS problem.
J. Cheminformatics, 2013

UniChem: a unified chemical structure cross-referencing and identifier tracking system.
J. Cheminformatics, 2013

OntoQuery: easy-to-use web-based OWL querying.
Bioinform., 2013

Exploiting disjointness axioms to improve semantic similarity measures.
Bioinform., 2013

The MetaboLights repository: curation challenges in metabolomics.
Database J. Biol. Databases Curation, 2013

An Ontology for Drug-drug Interactions.
Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

Shape Perception in Chemistry.
Proceedings of the Second Interdisciplinary Workshop The Shape of Things, 2013

2012
Structure-based classification and ontology in chemistry.
J. Cheminformatics, 2012

Structured chemical class definitions and automated matching for chemical ontology evolution.
J. Cheminformatics, 2012

Cheminformatics.
Commun. ACM, 2012

Self-organizing ontology of biochemically relevant small molecules.
BMC Bioinform., 2012

Process attributes in bio-ontologies.
BMC Bioinform., 2012

Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Modular Extensions to the ChEBI Ontology.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Waves and fields in bio-ontologies.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Modelling Highly Symmetrical Molecules: Linking Ontologies and Graphs.
Proceedings of the Artificial Intelligence: Methodology, Systems, and Applications, 2012

2011
Chemical ontologies: what are they, what are they for and what are the challenges.
J. Cheminformatics, 2011

Unintended consequences of existential quantifications in biomedical ontologies.
BMC Bioinform., 2011

Modularization Requirements in Bio-Ontologies: A Case Study of ChEbi.
Proceedings of the Modular Ontologies - Proceedings of the Fifth International Workshop, 2011

Parts and Wholes, Shapes and Holes in Living Beings.
Proceedings of the First Interdisciplinary Workshop on SHAPES, 2011

Modelling Threshold Phenomena in OWL: Metabolite Concentrations as Evidence For Disorders.
Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), 2011

A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns.
Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), 2011

Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Hyperontology for the Biomedical Ontologist: A Sketch and Some Examples.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Recent Developments in the ChEBI Ontology.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Dispositions and Processes in the Emotion Ontology.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

What's in an 'is about' Link? Chemical Diagrams and the Information Artifact Ontology.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences.
Proceedings of the Modeling and Using Context, 2011

2010
Chemical Entities of Biological Interest: an update.
Nucleic Acids Res., 2010

ChEBI: a chemistry ontology and database.
J. Cheminformatics, 2010

Representing Chemicals Using OWL, Description Graphs and Rules.
Proceedings of the 7th International Workshop on OWL: Experiences and Directions (OWLED 2010), 2010

What are chemical structures and their relations?
Proceedings of the Formal Ontology in Information Systems, 2010

Ontological dependence, dispositions and institutional reality in chemistry.
Proceedings of the Formal Ontology in Information Systems, 2010

2009
Semantic access to chemistry data with the ChEBI ontology and web services.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

2008
ChEBI: a database and ontology for chemical entities of biological interest.
Nucleic Acids Res., 2008

The ChEBI Ontology: An Ontology for Chemistry within a Biological Context.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008


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