Neil Swainston

According to our database, Neil Swainston authored at least 21 papers between 2006 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

DeepGraphMolGen, a multi-objective, computational strategy for generating molecules with desirable properties: a graph convolution and reinforcement learning approach.

Yash Khemchandani, Stephen O'Hagan, Soumitra Samanta, Neil Swainston, Timothy J. Roberts, Danushka Bollegala, Douglas B. Kell

J. Cheminformatics, 2020

2018

PartsGenie: an integrated tool for optimizing and sharing synthetic biology parts.

Neil Swainston, Mark Dunstan, Adrian J. Jervis, Christopher J. Robinson, Pablo Carbonell, Alan R. Williams, Jean-Loup Faulon, Nigel S. Scrutton, Douglas B. Kell

Bioinform., 2018

Selenzyme: enzyme selection tool for pathway design.

Pablo Carbonell, Jerry Wong, Neil Swainston, Eriko Takano, Nicholas J. Turner, Nigel S. Scrutton, Douglas B. Kell, Rainer Breitling, Jean-Loup Faulon

Bioinform., 2018

2017

CodonGenie: optimised ambiguous codon design tools.

Neil Swainston, Andrew Currin, Lucy Green, Rainer Breitling, Philip J. Day, Douglas B. Kell

PeerJ Comput. Sci., 2017

2016

ChEBI in 2016: Improved services and an expanding collection of metabolites.

Janna Hastings, Gareth I. Owen, Adriano Dekker, Marcus Ennis, Namrata Kale, Venkatesh Muthukrishnan, Steve Turner, Neil Swainston, Pedro Mendes, Christoph Steinbeck

Nucleic Acids Res., 2016

libChEBI: an API for accessing the ChEBI database.

Neil Swainston, Janna Hastings, Adriano Dekker, Venkatesh Muthukrishnan, John W. May, Christoph Steinbeck, Pedro Mendes

J. Cheminformatics, 2016

2015

ChEBI for systems biology and metabolic modelling.

Janna Hastings, Neil Swainston, Venkatesh Muthukrishnan, Namrata Kale, Adriano Dekker, Gareth I. Owen, Steve Turner, Pedro Mendes, Christoph Steinbeck

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

GeneGenie: optimized oligomer design for directed evolution.

Neil Swainston, Andrew Currin, Philip J. Day, Douglas B. Kell

Nucleic Acids Res., 2014

2013

Path2Models: large-scale generation of computational models from biochemical pathway maps.

Finja Büchel, Nicolas Rodriguez, Neil Swainston, Clemens Wrzodek, Tobias Czauderna, Roland Keller, Florian Mittag, Michael Schubert, Mihai Glont, Martin Golebiewski, Martijn P. van Iersel, Sarah M. Keating, Matthias Rall, Michael Wybrow, Henning Hermjakob, Michael Hucka, Douglas B. Kell, Wolfgang Müller, Pedro Mendes, Andreas Zell, Claudine Chaouiya, Julio Saez-Rodriguez, Falk Schreiber, Camille Laibe, Andreas Dräger, Nicolas Le Novère

BMC Syst. Biol., 2013

2012

Improving metabolic flux predictions using absolute gene expression data.

Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston

BMC Syst. Biol., 2012

2011

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks.

Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton

J. Integr. Bioinform., 2011

A community effort towards a knowledge-base and mathematical model of the human pathogen Salmonella Typhimurium LT2.

Ines Thiele, Daniel R. Hyduke, Benjamin Steeb, Guy Fankam, Douglas K. Allen, Susanna Bazzani, Pep Charusanti, Feng-Chi Chen, Ronan M. T. Fleming, Chao A. Hsiung, Sigrid C. J. De Keersmaecker, Yu-Chieh Liao, Kathleen Marchal, Monica L. Mo, Emre Özdemir, Anu Raghunathan, Jennifer L. Reed, Sook-Il Shin, Sara Sigurbjörnsdóttir, Jonas Steinmann, Suresh Sudarsan, Neil Swainston, Inge M. Thijs, Karsten Zengler, Bernhard O. Palsson, Joshua N. Adkins, Dirk Bumann

BMC Syst. Biol., 2011

2010

Towards a genome-scale kinetic model of cellular metabolism.

Kieran Smallbone, Evangelos Simeonidis, Neil Swainston, Pedro Mendes

BMC Syst. Biol., 2010

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.

Karin Radrich, Yoshimasa Tsuruoka, Paul D. Dobson, Albert Gevorgyan, Neil Swainston, Gino Baart, Jean-Marc Schwartz

BMC Syst. Biol., 2010

Further developments towards a genome-scale metabolic model of yeast.

Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes

BMC Syst. Biol., 2010

Systematic integration of experimental data and models in systems biology.

Peter Li, Joseph O. Dada, Daniel Jameson, Irena Spasic, Neil Swainston, Kathleen Carroll, Warwick B. Dunn, Farid Khan, Naglis Malys, Hanan L. Messiha, Evangelos Simeonidis, Dieter Weichart, Catherine Winder, Jill Wishart, David S. Broomhead, Carole A. Goble, Simon J. Gaskell, Douglas B. Kell, Hans V. Westerhoff, Pedro Mendes, Norman W. Paton

BMC Bioinform., 2010

Integrative Information Management for Systems Biology.

Neil Swainston, Daniel Jameson, Peter Li, Irena Spasic, Pedro Mendes, Norman W. Paton

Proceedings of the Data Integration in the Life Sciences, 7th International Conference, 2010

2009

Information management for high content live cell imaging.

Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton

BMC Bioinform., 2009

libAnnotationSBML: a library for exploiting SBML annotations.

Neil Swainston, Pedro Mendes

Bioinform., 2009

2007

Pride Wizard: generation of standards compliant quantitative proteomics data.

Neil Swainston, Jennifer A. Siepen, Andrew R. Jones, Sarah R. Hart, Henning Hermjakob, Philip Jones, Simon J. Hubbard

BMC Syst. Biol., 2007

2006

Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it.

Kevin L. Garwood, Christopher Garwood, Cornelia Hedeler, Tony Griffiths, Neil Swainston, Stephen G. Oliver, Norman W. Paton

BMC Bioinform., 2006