Jean-Marc Schwartz

According to our database1, Jean-Marc Schwartz authored at least 28 papers between 2001 and 2022.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.



In proceedings 
PhD thesis 


Online presence:



SubcellulaRVis: a web-based tool to simplify and visualise subcellular compartment enrichment.
Nucleic Acids Res., 2022

Combinatorial mathematical modelling approaches to interrogate rear retraction dynamics in 3D cell migration.
PLoS Comput. Biol., 2021

Metabolic Models.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Modelling the role of dual specificity phosphatases in herceptin resistant breast cancer cell lines.
Comput. Biol. Chem., 2019

SkeletalVis: an exploration and meta-analysis data portal of cross-species skeletal transcriptomics data.
Bioinform., 2019

Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis.
BMC Syst. Biol., 2018

Using set theory to reduce redundancy in pathway sets.
BMC Bioinform., 2018

A meta-analysis portal for human breast cancer transcriptomics data: BreastCancerVis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Insight into glucocorticoid receptor signalling through interactome model analysis.
PLoS Comput. Biol., 2017

Cyclic decomposition explains a photosynthetic down regulation for Chlamydomonas reinhardtii.
Biosyst., 2017

A MAPK-Driven Feedback Loop Suppresses Rac Activity to Promote RhoA-Driven Cancer Cell Invasion.
PLoS Comput. Biol., 2016

PhenomeScape: a cytoscape app to identify differentially regulated sub-networks using known disease associations.
Bioinform., 2016

A logical model of HIV-1 interactions with the T-cell activation signalling pathway.
Bioinform., 2015

In silico prediction of elementary mode fluxes.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

Applications of p53 interactome analysis to personalised drug discovery.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

PathNER: a tool for systematic identification of biological pathway mentions in the literature.
BMC Syst. Biol., 2013

Comprehensive Modelling of the <i>Neurospora</i> Circadian Clock and Its Temperature Compensation.
PLoS Comput. Biol., 2012

Exploring the genetic control of glycolytic oscillations in Saccharomyces Cerevisiae.
BMC Syst. Biol., 2012

Integration of metabolic databases for the reconstruction of genome-scale metabolic networks.
BMC Syst. Biol., 2010

Streamlining the construction of large-scale dynamic models using generic kinetic equations.
Bioinform., 2010

Deterministic mathematical models of the cAMP pathway in Saccharomyces cerevisiae.
BMC Syst. Biol., 2009

Quantitative elementary mode analysis of metabolic pathways: the example of yeast glycolysis.
BMC Bioinform., 2006

Identification of metabolic units induced by environmental signals.
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Modelling liver tissue properties using a non-linear visco-elastic model for surgery simulation.
Medical Image Anal., 2005

A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.
Proceedings of the ECCB/JBI'05 Proceedings, Fourth European Conference on Computational Biology/Sixth Meeting of the Spanish Bioinformatics Network (Jornadas de BioInformática), Palacio de Congresos, Madrid, Spain, September 28, 2005

Virtual Environment and Sensori-Motor Activities: Haptic, Auditory and Olfactory Devices.
Proceedings of the 12-th International Conference in Central Europe on Computer Graphics, 2004

Integrating Geometric and Biomechanical Models of a Liver Tumour for Cryosurgery Simulation.
Proceedings of the Surgery Simulation and Soft Tissue Modeling, International Symposium, 2003

Non-linear Soft Tissue Deformations for the Simulation of Percutaneous Surgeries.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2001