Jeroen Raes

According to our database, Jeroen Raes authored at least 10 papers between 2005 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

CoNet app: inference of biological association networks using Cytoscape.

Karoline Faust, Jeroen Raes

F1000Research, 2016

IPED: a highly efficient denoising tool for Illumina MiSeq Paired-end 16S rRNA gene amplicon sequencing data.

Mohamed Mysara, Natalie Leys, Jeroen Raes, Pieter Monsieurs

BMC Bioinform., 2016

A web application for sample size and power calculation in case-control microbiome studies.

Federico Mattiello, Bie M. P. Verbist, Karoline Faust, Jeroen Raes, William D. Shannon, Luc Bijnens, Olivier Thas

Bioinform., 2016

2015

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota.

Kristoffer Forslund, Falk Hildebrand, Trine Rask Nielsen, Gwen Falony, Emmanuelle Le Chatelier, Shinichi Sunagawa, Edi Prifti, Sara Vieira-Silva, Valborg Gudmundsdottir, Helle Krogh Pedersen, Manimozhiyan Arumugam, Karsten Kristiansen, Anita Yvonne Voigt, Henrik Vestergaard, Rajna Hercog, Paul I. Costea, Jens Roat Kultima, Junhua Li, Torben Jørgensen, Florence Levenez, Joël Dore, Henrik Bjørn Nielsen, Søren Brunak, Jeroen Raes, Torben Hansen, Jun Wang, S. Dusko Ehrlich, Peer Bork, Oluf Pedersen

Nat., 2015

NoDe: a fast error-correction algorithm for pyrosequencing amplicon reads.

Mohamed Mysara, Natalie Leys, Jeroen Raes, Pieter Monsieurs

BMC Bioinform., 2015

2014

Addendum: Enterotypes of the human gut microbiome.

Manimozhiyan Arumugam, Jeroen Raes, Eric Pelletier, Denis Le Paslier, Takuji Yamada, Daniel R. Mende, Gabriel R. Fernandes, Julien Tap, Thomas Brüls, Jean-Michel Batto, Marcelo Bertalan, Natalia Borruel, Francesc Casellas, Leyden Fernández, Laurent Gautier, Torben Hansen, Masahira Hattori, Tetsuya Hayashi, Michiel Kleerebezem, Ken Kurokawa, Marion Leclerc, Florence Levenez, Chaysavanh Manichanh, Henrik Bjørn Nielsen, Trine Rask Nielsen, Nicolas Pons, Julie Poulain, Junjie Qin, Thomas Sicheritz-Pontén, Sebastian Tims, David Torrents, Edgardo Ugarte, Erwin G. Zoetendal, Jun Wang, Francisco Guarner, Oluf Pedersen, Willem M. de Vos, Søren Brunak, Joël Dore, MetaHIT consortium, Jean Weissenbach, S. Dusko Ehrlich, Peer Bork

Nat., 2014

2012

Microbial Co-occurrence Relationships in the Human Microbiome.

Karoline Faust, Jarupon Fah Sathirapongsasuti, Jacques Izard, Nicola Segata, Dirk Gevers, Jeroen Raes, Curtis Huttenhower

PLoS Comput. Biol., 2012

2010

SmashCell: a software framework for the analysis of single-cell amplified genome sequences.

Eoghan D. Harrington, Manimozhiyan Arumugam, Jeroen Raes, Peer Bork, David A. Relman

Bioinform., 2010

SmashCommunity: a metagenomic annotation and analysis tool.

Manimozhiyan Arumugam, Eoghan D. Harrington, Konrad U. Foerstner, Jeroen Raes, Peer Bork

Bioinform., 2010

2005

GeneFarm, structural and functional annotation of <i>Arabidopsis</i> gene and protein families by a network of experts.

Sébastien Aubourg, Véronique Brunaud, Clémence Bruyère, J. Mark Cock, Richard Cooke, Annick Cottet, Arnaud Couloux, Patrice Déhais, Gilbert Deléage, Aymeric Duclert, Manuel Echeverria, Aimée Eschbach, Denis Falconet, Ghislain Filippi, Christine Gaspin, Christophe Geourjon, Jean-Michel Grienenberger, Guy Houlné, Elisabeth Jamet, Frédéric Lechauve, Olivier Leleu, Philippe Leroy, Régis Mache, Christian Meyer, Hafed Nedjari, Ioan Negrutiu, Valérie Orsini, Eric Peyretaillade, Cyril Pommier, Jeroen Raes, Jean-Loup Risler, Stéphane Rivière, Stephane Rombauts, Pierre Rouzé, Michel Schneider, Philippe Schwob, Ian Small, Ghislain Soumayet-Kampetenga, Darko Stankovski, Claire Toffano, Michael Tognolli, Michel Caboche, Alain Lecharny

Nucleic Acids Res., 2005