According to our database1, Takuji Yamada authored at least 14 papers between 2004 and 2019.
Legend:Book In proceedings Article PhD thesis Other
FuncTree2: an interactive radial tree for functional hierarchies and omics data visualization.
iPath3.0: interactive pathways explorer v3.
Nucleic Acids Research, 2018
VITCOMIC2: visualization tool for the phylogenetic composition of microbial communities based on 16S rRNA gene amplicons and metagenomic shotgun sequencing.
BMC Systems Biology, 2018
Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.
Journal of Chemical Information and Modeling, 2016
DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe.
BMC Bioinformatics, 2015
Addendum: Enterotypes of the human gut microbiome.
CLAST: CUDA implemented large-scale alignment search tool.
BMC Bioinformatics, 2014
iPath2.0: interactive pathway explorer.
Nucleic Acids Research, 2011
KEGG Atlas mapping for global analysis of metabolic pathways.
Nucleic Acids Research, 2008
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.
Nucleic Acids Research, 2007
Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways.
Journal of Chemical Information and Modeling, 2007
Extraction of phylogenetic network modules from the metabolic network.
BMC Bioinformatics, 2006
VisANT: data-integrating visual framework for biological networks and modules.
Nucleic Acids Research, 2005
Clustering under the line graph transformation: application to reaction network.
BMC Bioinformatics, 2004