Yu Lin

According to our database1, Yu Lin authored at least 153 papers between 1994 and 2019.

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Bibliography

2019
Approximate Reliability Evaluation of Large-Scale Multistate Series-Parallel Systems.
IEEE Trans. Reliability, 2019

Phylogenetic Reconstruction for Copy-Number Evolution Problems.
IEEE/ACM Trans. Comput. Biology Bioinform., 2019

Victors: a web-based knowledge base of virulence factors in human and animal pathogens.
Nucleic Acids Research, 2019

Skyblocking for entity resolution.
Inf. Syst., 2019

UAV-Assisted Emergency Communications: An Extended Multi-Armed Bandit Perspective.
IEEE Communications Letters, 2019

Publishing Differentially Private Datasets via Stable Microaggregation.
Proceedings of the Advances in Database Technology, 2019

A Highly Scalable Labelling Approach for Exact Distance Queries in Complex Networks.
Proceedings of the Advances in Database Technology, 2019

2018
Can a breakpoint graph be decomposed into none other than 2-cycles?
Theor. Comput. Sci., 2018

A Median Solver and Phylogenetic Inference Based on Double-Cut-and-Join Sorting.
Journal of Computational Biology, 2018

Exponential stability of impulsive discrete-time systems with infinite delays.
Int. J. Systems Science, 2018

Synchronization of stochastic impulsive discrete-time delayed networks via pinning control.
Neurocomputing, 2018

HaploJuice : accurate haplotype assembly from a pool of sequences with known relative concentrations.
BMC Bioinformatics, 2018

The eXtensible ontology development (XOD) principles and tool implementation to support ontology interoperability.
J. Biomedical Semantics, 2018

Assembly of Long Error-Prone Reads Using Repeat Graphs.
Proceedings of the Research in Computational Molecular Biology, 2018

Quality-Based User Recruitment in Mobile CrowdSensing.
Proceedings of the 14th International Conference on Mobile Ad-Hoc and Sensor Networks, 2018

Construction of Teaching Quality Assurance System in the Context of Engineering Education Certification.
Proceedings of the e-Learning, e-Education, and Online Training, 2018

2017
Ontobee: A linked ontology data server to support ontology term dereferencing, linkage, query and integration.
Nucleic Acids Research, 2017

Ontological representation, integration, and analysis of LINCS cell line cells and their cellular responses.
BMC Bioinformatics, 2017

Drug target ontology to classify and integrate drug discovery data.
J. Biomedical Semantics, 2017

Video attention using multiple temporal scales coding reconstruction.
Proceedings of the 4th International Conference on Systems and Informatics, 2017

NAND-NOR: A Compact, Fast, and Delay Balanced FPGA Logic Element.
Proceedings of the 2017 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, 2017

2016
Assembly of long error-prone reads using de Bruijn graphs.
Proc. Natl. Acad. Sci. U.S.A., 2016

Plancherel-Rotach type asymptotics of the sieved Pollaczek polynomials via the Riemann-Hilbert approach.
Journal of Approximation Theory, 2016

The development of non-coding RNA ontology.
IJDMB, 2016

A maximum-likelihood approach for building cell-type trees by lifting.
BMC Genomics, 2016

The Ontology of Biological and Clinical Statistics (OBCS) for standardized and reproducible statistical analysis.
J. Biomedical Semantics, 2016

VICO: Ontology-based representation and integrative analysis of Vaccination Informed Consent forms.
J. Biomedical Semantics, 2016

OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data.
J. Biomedical Semantics, 2016

The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.
J. Biomedical Semantics, 2016

Ontology-based collection, representation and analysis of drug-associated neuropathy adverse events.
J. Biomedical Semantics, 2016

Developing a dynamic neighborhood structure for an adaptive hybrid simulated annealing - tabu search algorithm to solve the symmetrical traveling salesman problem.
Appl. Soft Comput., 2016

Analysis of gene copy number changes in tumor phylogenetics.
Algorithms for Molecular Biology, 2016

A Hybrid Algorithm of Extreme Learning Machine and Sparse Auto-Encoder.
Proceedings of the Smart Computing and Communication, 2016

Assembly of Long Error-Prone Reads Using de Bruijn Graphs.
Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

The Cell Line Ontology Integration and Analysis of the Knowledge of LINCS Cell Lines.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Building Concordant Ontologies for Drug Discovery.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
Calibration-Based Iterative Learning Control for Path Tracking of Industrial Robots.
IEEE Trans. Industrial Electronics, 2015

A study and toolkit of CHECK-THEN-ACT idioms of Java concurrent collections.
Softw. Test., Verif. Reliab., 2015

An Exact Algorithm to Compute the Double-Cut-and-Join Distance for Genomes with Duplicate Genes.
Journal of Computational Biology, 2015

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.
J. Biomedical Semantics, 2015

Ontology-based representation and analysis of host-Brucella interactions.
J. Biomedical Semantics, 2015

Maximum Parsimony Analysis of Gene Copy Number Changes.
Proceedings of the Algorithms in Bioinformatics - 15th International Workshop, 2015

Relative pose estimation from points by Kalman filters.
Proceedings of the 2015 IEEE International Conference on Robotics and Biomimetics, 2015

Study and Refactoring of Android Asynchronous Programming (T).
Proceedings of the 30th IEEE/ACM International Conference on Automated Software Engineering, 2015

Refactorings for Android Asynchronous Programming.
Proceedings of the 30th IEEE/ACM International Conference on Automated Software Engineering, 2015

An Iterative Approach for Phylogenetic Analysis of Tumor Progression Using FISH Copy Number.
Proceedings of the Bioinformatics Research and Applications - 11th International Symposium, 2015

Ontorat: Automatic generation and editing of ontology terms.
Proceedings of the International Conference on Biomedical Ontology, 2015

Ontoanimal tools for reusing ontologies, generating and editing ontology terms, and dereferencing ontology terms.
Proceedings of the International Conference on Biomedical Ontology, 2015

A semantic approach for knowledge capture of MIcroRNA-Target gene interactions.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

A domain ontology for the Non-Coding RNA field.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Updates on the web-based VIOLIN vaccine database and analysis system.
Nucleic Acids Research, 2014

Study of cell differentiation by phylogenetic analysis using histone modification data.
BMC Bioinformatics, 2014

MLGO: phylogeny reconstruction and ancestral inference from gene-order data.
BMC Bioinformatics, 2014

CLO: The cell line ontology.
J. Biomedical Semantics, 2014

The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events.
J. Biomedical Semantics, 2014

OAE: The Ontology of Adverse Events.
J. Biomedical Semantics, 2014

Manifold de Bruijn Graphs.
Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

Environment-Sensitive Performance Tuning for Distributed Service Orchestration.
Proceedings of the High Performance Computing for Computational Science - VECPAR 2014 - 11th International Conference, Eugene, OR, USA, June 30, 2014

Retrofitting concurrency for Android applications through refactoring.
Proceedings of the 22nd ACM SIGSOFT International Symposium on Foundations of Software Engineering, (FSE-22), Hong Kong, China, November 16, 2014

An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes.
Proceedings of the Research in Computational Molecular Biology, 2014

OBCS: The Ontology of Biological and Clinical Statistics.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Ontobat: An Ontology-based Semantic Web Approach for Linked Data Processing and Analysis.
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Development of a BFO-Based Informed Consent Ontology (ICO).
Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Analysis of Content Coverage for Informed Consent Concepts.
Proceedings of the AMIA 2014, 2014

2013
Simultaneously Extracting Multiple Parameters via Fitting One Single Autocorrelation Function Curve in Diffuse Correlation Spectroscopy.
IEEE Trans. Biomed. Engineering, 2013

Meta-analysis of variables affecting mouse protection efficacy of whole organism Brucella vaccines and vaccine candidates.
BMC Bioinformatics, 2013

Sorting genomes with rearrangements and segmental duplications through trajectory graphs.
BMC Bioinformatics, 2013

Global asymptotics of the discrete Chebyshev polynomials.
Asymptotic Analysis, 2013

Phylogenetic Analysis of Cell Types Using Histone Modifications.
Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

Maximum Likelihood Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Tree of 68 Eukaryotes.
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013

Bita: Coverage-guided, automatic testing of actor programs.
Proceedings of the 2013 28th IEEE/ACM International Conference on Automated Software Engineering, 2013

An 11b 3.6GS/s time-interleaved SAR ADC in 65nm CMOS.
Proceedings of the 2013 IEEE International Solid-State Circuits Conference, 2013

CHECK-THEN-ACT Misuse of Java Concurrent Collections.
Proceedings of the Sixth IEEE International Conference on Software Testing, 2013

Ontology modeling of genetic susceptibility to adverse events following vaccination.
Proceedings of the ICBO2013 Workshops: International Workshop on Vaccine and Drug Ontology Studies (VDOS 2013), International Workshop on Definitions in Ontologies (DO 2013), part of the Semantic Trilogy 2013 , Montreal, Quebec, Canada, July 6th, 2013

Approaches to Building Metadata for Data Curation.
Proceedings of the 2013 International Conference on Dublin Core and Metadata Applications, 2013

Rearrangements in Phylogenetic Inference: Compare, Model, or Encode?
Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012
An 11b Pipeline ADC With Parallel-Sampling Technique for Converting Multi-Carrier Signals.
IEEE Trans. on Circuits and Systems, 2012

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion.
BMC Bioinformatics, 2012

Ontology representation and analysis of vaccine formulation and administration and their effects on vaccine immune responses.
J. Biomedical Semantics, 2012

TIBA: a tool for phylogeny inference from rearrangement data with bootstrap analysis.
Bioinformatics, 2012

A dynamic latched comparator for low supply voltages down to 0.45 V in 65-nm CMOS.
Proceedings of the 2012 IEEE International Symposium on Circuits and Systems, 2012

Evaluating Machine-Independent Metrics for State-Space Exploration.
Proceedings of the Fifth IEEE International Conference on Software Testing, 2012

Maintaining invariant traceability through bidirectional transformations.
Proceedings of the 34th International Conference on Software Engineering, 2012

Ontorat web server for automatic generation and annotations of new ontology terms.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

2011
Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology.
J. Biomedical Semantics, 2011

Bootstrapping Phylogenies Inferred from Rearrangement Data.
Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

An 11b pipeline ADC with dual sampling technique for converting multi-carrier signals.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2011), 2011

A Metric for Phylogenetic Trees Based on Matching.
Proceedings of the Bioinformatics Research and Applications - 7th International Symposium, 2011

OntoFox and its Application in Development of Brucellosis Ontology.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Towards a Semantic Web Application: Ontology-Driven Ortholog Clustering Analysis.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Refining Ontology for Glucose Metabolism Disorders.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010
Sorting Signed Permutations by Inversions in O(nlogn) Time.
Journal of Computational Biology, 2010

A new approach for fast segment-based protection in WDM mesh networks.
Int. J. Communication Systems, 2010

Heuristics for the inversion median problem.
BMC Bioinformatics, 2010

Estimating true evolutionary distances under rearrangements, duplications, and losses.
BMC Bioinformatics, 2010

Fast and Accurate Phylogenetic Reconstruction from High-Resolution Whole-Genome Data and a Novel Robustness Estimator.
Proceedings of the Comparative Genomics - International Workshop, 2010

A New Genomic Evolutionary Model for Rearrangements, Duplications, and Losses That Applies across Eukaryotes and Prokaryotes.
Proceedings of the Comparative Genomics - International Workshop, 2010

2009
A 12 bit 2.9 GS/s DAC With IM3 ≪ -60 dBc Beyond 1 GHz in 65 nm CMOS.
J. Solid-State Circuits, 2009

Hurdles and Sorting by Inversions: Combinatorial, Statistical, and Experimental Results.
Journal of Computational Biology, 2009

From Ontology for Genetic Interval (OGI) to Sequence Assembly - Ontology applying to next generation sequencing.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

Evaluation Model for Venture Capital with Intuitionistic Fuzzy Information.
Proceedings of the 2009 IITA International Conference on Services Science, 2009

Sorting Signed Permutations by Inversions in O(nlogn) Time.
Proceedings of the Research in Computational Molecular Biology, 2009

A Divergence-Oriented Approach to Adaptive Random Testing of Java Programs.
Proceedings of the ASE 2009, 2009

A 12b 2.9GS/s DAC with IM3 ≪-60dBc beyond 1GHz in 65nm CMOS.
Proceedings of the IEEE International Solid-State Circuits Conference, 2009

Incremental call graph reanalysis for AspectJ software.
Proceedings of the 25th IEEE International Conference on Software Maintenance (ICSM 2009), 2009

Fast ARFTIS Reconstruction Algorithms Using CUDA.
Proceedings of the High Performance Computing and Applications, 2009

2008
Approximation Algorithms for Biclustering Problems.
SIAM J. Comput., 2008

Hurdles Hardly Have to Be Heeded.
Proceedings of the Comparative Genomics, International Workshop, 2008

A Fragmentation Event Model for Peptide Identification by Mass Spectrometry.
Proceedings of the Research in Computational Molecular Biology, 2008

Effective identification of failure-inducing changes: a hybrid approach.
Proceedings of the 8th ACM SIGPLAN-SIGSOFT Workshop on Program Analysis for Software Tools and Engineering, 2008

Estimating true evolutionary distances under the DCJ model.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

AutoFlow: An automatic debugging tool for AspectJ software.
Proceedings of the 24th IEEE International Conference on Software Maintenance (ICSM 2008), September 28, 2008

Change impact analysis for AspectJ programs.
Proceedings of the 24th IEEE International Conference on Software Maintenance (ICSM 2008), September 28, 2008

Celadon: a change impact analysis tool for aspect-oriented programs.
Proceedings of the 30th International Conference on Software Engineering (ICSE 2008), 2008

Friendly P2P: Application-Level Congestion Control for Peer-to-Peer Applications.
Proceedings of the Global Communications Conference, 2008. GLOBECOM 2008, New Orleans, LA, USA, 30 November, 2008

A Hybrid Approach for Developing an Ontology of Genetic Susceptibility to Common Disease (OGSCD).
Proceedings of the 2008 International Conference on BioMedical Engineering and Informatics, 2008

Flota: a programmer assistant for locating faulty changes in AspectJ software evolution.
Proceedings of the 2008 AOSD workshop on Linking aspect technology and evolution, 2008

Modeling and Quantifying the Impact of P2P File Sharing Traffic on Traditional Internet Traffic.
Proceedings of the 22nd International Conference on Advanced Information Networking and Applications, 2008

2007
An Iterative Algorithm to Quantify Factors Influencing peptide Fragmentation during Tandem Mass Spectrometry.
J. Bioinformatics and Computational Biology, 2007

2006
Measurement-based TFRC: improving TFRC in heterogeneous mobile networks.
IEEE Trans. Wireless Communications, 2006

Yield enhancement with optimal area allocation for ratio-critical analog circuits.
IEEE Trans. on Circuits and Systems, 2006

An adaptive algorithm for active queue management.
J. Comb. Optim., 2006

Approximation Algorithms for Bi-clustering Problems.
Proceedings of the Algorithms in Bioinformatics, 6th International Workshop, 2006

Designing Fast and Bandwidth Efficient Protection Scheme for WDM Optical Networks.
Proceedings of the NETWORKING 2006, 2006

Unit resistor characterization for matching-critical circuit design.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2006), 2006

Resource discovery in locality-aware group-based semantic overlay of peer-to-peer networks.
Proceedings of the 1st International Conference on Scalable Information Systems, 2006

Easily-Implemented Adaptive Packet Sampling for High Speed Networks Flow Measurement.
Proceedings of the Computational Science, 2006

Path-based Protection in WDM Networks with Differentiated Quality-of-Protection.
Proceedings of IEEE International Conference on Communications, 2006

A Willing-to-Share Based Incentive Mechanism for File Sharing P2P Networks.
Proceedings of the 10th International Conference on CSCW in Design, 2006

2005
A fuzzy-based approach to remove clock skew and reset from one-way delay measurement.
IEEE Trans. Neural Networks, 2005

Multi-rate aware topology control in multi-hop ad hoc networks.
Proceedings of the IEEE Wireless Communications and Networking Conference, 2005

QoSJava: An End-to-End QoS Solution.
Proceedings of the Management of Multimedia Networks and Services, 2005

kT/C constrained optimization of power in pipeline ADCs.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2005), 2005

Power dependence of feedback amplifiers on opamp architecture.
Proceedings of the International Symposium on Circuits and Systems (ISCAS 2005), 2005

A Service Discovery Protocol with Maximal Area Disjoint Paths for Mobile Ad Hoc Networks.
Proceedings of the Ad-Hoc, Mobile, and Wireless Networks, 4th International Conference, 2005

2004
A new approach for path capacity measurement in Internet.
J. High Speed Networks, 2004

LRED: A Robust Active Queue Management Scheme Based on Packet Loss Ratio.
Proceedings of the Proceedings IEEE INFOCOM 2004, 2004

A fuzzy-based algorithm to remove clock skew and reset from one-way delay measurement [Internet end-to-end performance measurement].
Proceedings of the Global Telecommunications Conference, 2004. GLOBECOM '04, Dallas, Texas, USA, 29 November, 2004

A nonparametric classifier for unsegmented text.
Proceedings of the Document Recognition and Retrieval XI, 2004

2003
IEEE 802.11 Distributed Coordination Function: Enhancement and Analysis.
J. Comput. Sci. Technol., 2003

A Distributed Fair Scheduling Scheme in Wireless LAN.
J. Comput. Sci. Technol., 2003

Dynamic Retransmission Control for Reliable Mobile Multicast.
J. Comput. Sci. Technol., 2003

An analytic study of XML database techniques.
Industrial Management and Data Systems, 2003

An enhanced buffer forwarding control scheme in smooth handover to improve TCP performance.
Proceedings of the IEEE 14th International Symposium on Personal, 2003

Measuring asymmetric link bandwidths in Internet using a multi-packet delay model.
Proceedings of IEEE International Conference on Communications, 2003

Design of a robust self-adapt DCF-based protocol.
Proceedings of the Global Telecommunications Conference, 2003

Modeling multiple TCP connections established between a busy server and many receivers.
Proceedings of the Global Telecommunications Conference, 2003

MBTFRC: a TFRC enhancement for heterogeneous mobile networks.
Proceedings of the Global Telecommunications Conference, 2003

WRHMCC: a new congestion control mechanism for multicast applications.
Proceedings of the Global Telecommunications Conference, 2003

Indirect Symbolic Correlation Approach to Unsegmented Text Recognition.
Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, 2003

2002
Resistors layout for enhancing yield of R-2R DACs.
Proceedings of the 2002 International Symposium on Circuits and Systems, 2002

2001
Application Intrusion Detection using Language Library Calls.
Proceedings of the 17th Annual Computer Security Applications Conference (ACSAC 2001), 2001

1994
Objective-Centered formulation of an Adaptive fuzzy Control Scheme.
International Journal of Uncertainty, Fuzziness and Knowledge-Based Systems, 1994


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