Joost Schymkowitz

According to our database, Joost Schymkowitz authored at least 28 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2023

SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models.

Kobe Janssen, Ramon Duran-Romaña, Guy Bottu, Mainak Guharoy, Alexander Botzki, Frederic Rousseau, Joost Schymkowitz

BMC Bioinform., December, 2023

2021

In silico prediction of in vitro protein liquid-liquid phase separation experiments outcomes with multi-head neural attention.

Daniele Raimondi, Gabriele Orlando, Emiel Michiels, Donya Pakravan, Anna Bratek-Skicki, Ludo Van Den Bosch, Yves Moreau, Frederic Rousseau, Joost Schymkowitz

Bioinform., 2021

2020

WALTZ-DB 2.0: an updated database containing structural information of experimentally determined amyloid-forming peptides.

Nikolaos N. Louros, Katerina Konstantoulea, Matthias De vleeschouwer, Meine Ramakers, Joost Schymkowitz, Frederic Rousseau

Nucleic Acids Res., 2020

Protein Homeostasis Database: protein quality control in E.coli.

Reshmi Ramakrishnan, Bert Houben, Lukasz Kreft, Alexander Botzki, Joost Schymkowitz, Frederic Rousseau

Bioinform., 2020

2019

Differential proteostatic regulation of insoluble and abundant proteins.

Reshmi Ramakrishnan, Bert Houben, Frederic Rousseau, Joost Schymkowitz

Bioinform., 2019

2016

From Binding-Induced Dynamic Effects in SH3 Structures to Evolutionary Conserved Sectors.

Ana Zafra Ruano, Elisa Cilia, José R. Couceiro, Javier Ruiz Sanz, Joost Schymkowitz, Frederic Rousseau, Irene Luque, Tom Lenaerts

PLoS Comput. Biol., 2016

2015

What Makes a Protein Sequence a Prion?

Raimon Sabate, Frederic Rousseau, Joost Schymkowitz, Salvador Ventura

PLoS Comput. Biol., 2015

Increased Aggregation Is More Frequently Associated to Human Disease-Associated Mutations Than to Neutral Polymorphisms.

Greet De Baets, Loic Van Doorn, Frederic Rousseau, Joost Schymkowitz

PLoS Comput. Biol., 2015

PrionW: a server to identify proteins containing glutamine/asparagine rich prion-like domains and their amyloid cores.

Rafael Zambrano, Oscar Conchillo-Solé, Valentin Iglesias, Ricard Illa, Frederic Rousseau, Joost Schymkowitz, Raimon Sabate, Xavier Daura, Salvador Ventura

Nucleic Acids Res., 2015

WALTZ-DB: a benchmark database of amyloidogenic hexapeptides.

Jacinte Beerten, Joost J. J. van Durme, Rodrigo Gallardo, Emidio Capriotti, Louise C. Serpell, Frederic Rousseau, Joost Schymkowitz

Bioinform., 2015

Solubis: optimize your protein.

Greet De Baets, Joost J. J. van Durme, Rob van der Kant, Joost Schymkowitz, Frederic Rousseau

Bioinform., 2015

2013

Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif.

Sebastian Maurer-Stroh, He Gao, Hao Han, Lies Baeten, Joost Schymkowitz, Frederic Rousseau, Louxin Zhang, Frank Eisenhaber

J. Bioinform. Comput. Biol., 2013

2012

SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants.

Greet De Baets, Joost J. J. van Durme, Joke Reumers, Sebastian Maurer-Stroh, Peter Vanhee, Joaquín Dopazo, Joost Schymkowitz, Frederic Rousseau

Nucleic Acids Res., 2012

2011

An Evolutionary Trade-Off between Protein Turnover Rate and Protein Aggregation Favors a Higher Aggregation Propensity in Fast Degrading Proteins.

Greet De Baets, Joke Reumers, Javier Delgado Blanco, Joaquín Dopazo, Joost Schymkowitz, Frederic Rousseau

PLoS Comput. Biol., 2011

BriX: a database of protein building blocks for structural analysis, modeling and design.

Peter Vanhee, Erik Verschueren, Lies Baeten, Francois Stricher, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

Nucleic Acids Res., 2011

A graphical interface for the FoldX forcefield.

Joost J. J. van Durme, Javier Delgado Blanco, Francois Stricher, Luis Serrano, Joost Schymkowitz, Frederic Rousseau

Bioinform., 2011

2010

PepX: a structural database of non-redundant protein-peptide complexes.

Peter Vanhee, Joke Reumers, Francois Stricher, Lies Baeten, Luis Serrano, Joost Schymkowitz, Frederic Rousseau

Nucleic Acids Res., 2010

Modeling protein-peptide interactions using protein fragments: fitting the pieces?

Peter Vanhee, Francois Stricher, Lies Baeten, Erik Verschueren, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

BMC Bioinform., 2010

2009

Accurate Prediction of DnaK-Peptide Binding via Homology Modelling and Experimental Data.

Joost J. J. van Durme, Sebastian Maurer-Stroh, Rodrigo Gallardo, Hannah Wilkinson, Frederic Rousseau, Joost Schymkowitz

PLoS Comput. Biol., 2009

Information theoretical quantification of cooperativity in signalling complexes.

Tom Lenaerts, Jesper Ferkinghoff-Borg, Joost Schymkowitz, Frederic Rousseau

BMC Syst. Biol., 2009

Using structural bioinformatics to investigate the impact of non synonymous SNPs and disease mutations: scope and limitations.

Joke Reumers, Joost Schymkowitz, Frederic Rousseau

BMC Bioinform., 2009

2008

Genome-Wide Prediction of SH2 Domain Targets Using Structural Information and the FoldX Algorithm.

Ignacio E. Sánchez, Pedro Beltrão, Francois Stricher, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Frederic Rousseau, Luis Serrano

PLoS Comput. Biol., 2008

Reconstruction of Protein Backbones from the BriX Collection of Canonical Protein Fragments.

Lies Baeten, Joke Reumers, Vicente Tur, François Stricher, Tom Lenaerts, Luis Serrano, Frederic Rousseau, Joost Schymkowitz

PLoS Comput. Biol., 2008

Joint annotation of coding and non-coding single nucleotide polymorphisms and mutations in the SNPeffect and PupaSuite databases.

Joke Reumers, Lucía Conde, Ignacio Medina, Sebastian Maurer-Stroh, Joost J. J. van Durme, Joaquín Dopazo, Frederic Rousseau, Joost Schymkowitz

Nucleic Acids Res., 2008

2006

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes.

Lucía Conde, Juan M. Vaquerizas, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz, Joaquín Dopazo

Nucleic Acids Res., 2006

SNPeffect v2.0: a new step in investigating the molecular phenotypic effects of human non-synonymous SNPs.

Joke Reumers, Sebastian Maurer-Stroh, Joost Schymkowitz, Frederic Rousseau

Bioinform., 2006

2005

The FoldX web server: an online force field.

Joost Schymkowitz, Jesper Borg, Francois Stricher, Robby Nys, Frederic Rousseau, Luis Serrano

Nucleic Acids Res., 2005

SNPeffect: a database mapping molecular phenotypic effects of human non-synonymous coding SNPs.

Joke Reumers, Joost Schymkowitz, Jesper Ferkinghoff-Borg, Francois Stricher, Luis Serrano, Frederic Rousseau

Nucleic Acids Res., 2005