Juan M. Vaquerizas

According to our database, Juan M. Vaquerizas authored at least 13 papers between 2003 and 2016.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2016

TADtool: visual parameter identification for TAD-calling algorithms.

Kai Kruse, Clemens B. Hug, Benjamín Hernández-Rodríguez, Juan M. Vaquerizas

Bioinform., 2016

2006

Next station in microarray data analysis: GEPAS.

David Montaner, Joaquín Tárraga, Jaime Huerta-Cepas, Jordi Burguet-Castell, Juan M. Vaquerizas, Lucía Conde, Pablo Minguez, Javier Vera, Sach Mukherjee, Joan Valls, Miguel A. G. Pujana, Eva Alloza, Javier Herrero, Fátima Al-Shahrour, Joaquín Dopazo

Nucleic Acids Res., 2006

PupaSuite: finding functional single nucleotide polymorphisms for large-scale genotyping purposes.

Lucía Conde, Juan M. Vaquerizas, Hernán Dopazo, Leonardo Arbiza, Joke Reumers, Frederic Rousseau, Joost Schymkowitz, Joaquín Dopazo

Nucleic Acids Res., 2006

BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

Fátima Al-Shahrour, Pablo Minguez, Joaquín Tárraga, David Montaner, Eva Alloza, Juan M. Vaquerizas, Lucía Conde, Christian Blaschke, Javier Vera, Joaquín Dopazo

Nucleic Acids Res., 2006

2005

GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data.

Juan M. Vaquerizas, Lucía Conde, Patricio Yankilevich, Amaya Cabezón, Pablo Minguez, Ramón Díaz-Uriarte, Fátima Al-Shahrour, Javier Herrero, Joaquín Dopazo

Nucleic Acids Res., 2005

PupasView: a visual tool for selecting suitable SNPs, with putative pathological effect in genes, for genotyping purposes.

Lucía Conde, Juan M. Vaquerizas, Carles Ferrer-Costa, Xavier de la Cruz, Modesto Orozco, Joaquín Dopazo

Nucleic Acids Res., 2005

BABELOMICS: a suite of web tools for functional annotation and analysis of groups of genes in high-throughput experiments.

Fátima Al-Shahrour, Pablo Minguez, Juan M. Vaquerizas, Lucía Conde, Joaquín Dopazo

Nucleic Acids Res., 2005

Highly specific and accurate selection of siRNAs for high-throughput functional assays.

Javier Santoyo, Juan M. Vaquerizas, Joaquín Dopazo

Bioinform., 2005

2004

New challenges in gene expression data analysis and the extended GEPAS.

Javier Herrero, Juan M. Vaquerizas, Fátima Al-Shahrour, Lucía Conde, Álvaro Mateos, Javier Santoyo, Ramón Díaz-Uriarte, Joaquín Dopazo

Nucleic Acids Res., 2004

PupaSNP Finder: a web tool for finding SNPs with putative effect at transcriptional level.

Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Sergio Ruiz-Llorente, Mercedes Robledo, Joaquín Dopazo

Nucleic Acids Res., 2004

DNMAD: web-based diagnosis and normalization for microarray data.

Juan M. Vaquerizas, Joaquín Dopazo, Ramón Díaz-Uriarte

Bioinform., 2004

Finding SNPs with Putative Phenotypic Effect at Transcriptional Level.

Lucía Conde, Juan M. Vaquerizas, Javier Santoyo, Fátima Al-Shahrour, Joaquín Dopazo

Proceedings of the 5th Annual Spanish Bioinformatics Conference, Barcelona, Catalonia, 2004

2003

GEPAS: a web-based resource for microarray gene expression data analysis.

Javier Herrero, Fátima Al-Shahrour, Ramón Díaz-Uriarte, Álvaro Mateos, Juan M. Vaquerizas, Javier Santoyo, Joaquín Dopazo

Nucleic Acids Res., 2003