Ken Chen

Orcid: 0000-0003-4013-5279

Affiliations:
  • The University of Texas, MD Anderson Cancer Center, Houston, TX, USA


According to our database1, Ken Chen authored at least 26 papers between 2002 and 2022.

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Bibliography

2022
Sensei: how many samples to tell a change in cell type abundance?
BMC Bioinform., 2022

2021
Stratified Test Accurately Identifies Differentially Expressed Genes Under Batch Effects in Single-Cell Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Publisher Correction: Single-cell manifold-preserving feature selection for detecting rare cell populations.
Nat. Comput. Sci., 2021

Single-cell manifold-preserving feature selection for detecting rare cell populations.
Nat. Comput. Sci., 2021

2020
Stratified Test Alleviates Batch Effects in Single-Cell Data.
Proceedings of the Algorithms for Computational Biology, 2020

2019
SCMarker: Ab initio marker selection for single cell transcriptome profiling.
PLoS Comput. Biol., 2019

2017
BreakPoint Surveyor: a pipeline for structural variant visualization.
Bioinform., 2017

2015
Genome Modeling System: A Knowledge Management Platform for Genomics.
PLoS Comput. Biol., 2015

Research on Collaborative Visualization Application of Dynamic Monitoring Figure Spot.
Proceedings of the Smart Graphics - 13th International Symposium, 2015

2014
Towards accurate characterization of clonal heterogeneity based on structural variation.
BMC Bioinform., 2014

Bias from removing read duplication in ultra-deep sequencing experiments.
Bioinform., 2014

2013
Integrated genotyping of structural variation.
Proceedings of the IEEE Global Conference on Signal and Information Processing, 2013

2012
SomaticSniper: identification of somatic point mutations in whole genome sequencing data.
Bioinform., 2012

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.
Bioinform., 2012

2010
CMDS: a population-based method for identifying recurrent DNA copy number aberrations in cancer from high-resolution data.
Bioinform., 2010

2009
VarScan: variant detection in massively parallel sequencing of individual and pooled samples.
Bioinform., 2009

2007
On the detection of functionally coherent groups of protein domains with an extension to protein annotation.
BMC Bioinform., 2007

2006
Prosody dependent speech recognition on radio news corpus of American English.
IEEE Trans. Speech Audio Process., 2006

Computational Analysis and Prediction of the Binding Motif and Protein Interacting Partners of the Abl SH3 Domain.
PLoS Comput. Biol., 2006

2005
Simultaneous recognition of words and prosody in the Boston University Radio Speech Corpus.
Speech Commun., 2005

Landmark-Based Speech Recognition: Report of the 2004 Johns Hopkins Summer Workshop.
Proceedings of the 2005 IEEE International Conference on Acoustics, 2005

2004
Automatic recognition of pitch movements using multilayer perceptron and time-Delay Recursive neural network.
IEEE Signal Process. Lett., 2004

Modeling pronunciation variation using artificial neural networks for English spontaneous speech.
Proceedings of the INTERSPEECH 2004, 2004

An automatic prosody labeling system using ANN-based syntactic-prosodic model and GMM-based acoustic-prosodic model.
Proceedings of the 2004 IEEE International Conference on Acoustics, 2004

2003
Prosody dependent speech recognition with explicit duration modelling at intonational phrase boundaries.
Proceedings of the 8th European Conference on Speech Communication and Technology, EUROSPEECH 2003, 2003

2002
An evaluation of using mutual information for selection of acoustic-features representation of phonemes for speech recognition.
Proceedings of the 7th International Conference on Spoken Language Processing, ICSLP2002, 2002


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