Kai Ye
Orcid: 0000-0002-2851-6741Affiliations:
- Xi'an Jiaotong University, School of Electronics and Information Engineering, China
- First Affiliated Hospital of Xi'an Jiaotong University, Genome Institute, China
- Washington University in St. Louis, MO, USA (2012)
- European Bioinformatics Institute, Cambridge, UK (2009)
- Leiden University, Netherlands (PhD 2008)
- Wuhan University, China (former)
According to our database1,
Kai Ye
authored at least 24 papers
between 2007 and 2023.
Collaborative distances:
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Bibliography
2023
DrugEx v3: scaffold-constrained drug design with graph transformer-based reinforcement learning.
J. Cheminformatics, December, 2023
Comparison and benchmark of structural variants detected from long read and long-read assembly.
Briefings Bioinform., July, 2023
2022
JAX-CNV: A Whole-genome Sequencing-based Algorithm for Copy Number Detection at Clinical Grade Level.
Genom. Proteom. Bioinform., December, 2022
Homotopic Convex Transformation: A New Landscape Smoothing Method for the Traveling Salesman Problem.
IEEE Trans. Cybern., 2022
High-quality <i>Arabidopsis thaliana</i> Genome Assembly with Nanopore and HiFi Long Reads.
Genom. Proteom. Bioinform., 2022
2021
DrugEx v2: de novo design of drug molecules by Pareto-based multi-objective reinforcement learning in polypharmacology.
J. Cheminformatics, 2021
Building Fast and Compact Sketches for Approximately Multi-Set Multi-Membership Querying.
Proceedings of the SIGMOD '21: International Conference on Management of Data, 2021
2020
Quant. Biol., 2020
MSIsensor-pro: Fast, Accurate, and Matched-normal-sample-free Detection of Microsatellite Instability.
Genom. Proteom. Bioinform., 2020
Proceedings of the MSR '20: 17th International Conference on Mining Software Repositories, 2020
2019
Learning From a Stream of Nonstationary and Dependent Data in Multiobjective Evolutionary Optimization.
IEEE Trans. Evol. Comput., 2019
An exploration strategy improves the diversity of de novo ligands using deep reinforcement learning: a case for the adenosine A2A receptor.
J. Cheminformatics, 2019
Mapping Genome Variants Sheds Light on Genetic and Phenotypic Differentiation in Chinese.
Genom. Proteom. Bioinform., 2019
PRESM: personalized reference editor for somatic mutation discovery in cancer genomics.
Bioinform., 2019
2017
Bioinform., 2017
2016
Detecting dispersed duplications in high-throughput sequencing data using a database-free approach.
Bioinform., 2016
2014
MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.
Bioinform., 2014
2012
PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data.
Bioinform., 2012
2009
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads.
Bioinform., 2009
2008
Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.
Bioinform., 2008
2007
An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.
Bioinform., 2007