Kenneth P. Nephew

According to our database1, Kenneth P. Nephew authored at least 17 papers between 2005 and 2016.

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Bibliography

2016
Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines.
BMC Systems Biology, 2016

2015
BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data.
Bioinformatics, 2015

2013
Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking Sequences.
J. Bioinformatics and Computational Biology, 2013

2012
A dynamic time order network for time-series gene expression data analysis.
BMC Systems Biology, 2012

A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters.
BMC Bioinformatics, 2012

2011
A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.
BMC Systems Biology, 2011

An ERα/modulator regulatory network in the breast cancer cells.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Empirical bayes model comparisons for differential methylation analysis.
Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2009
MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.
Nucleic Acids Research, 2009

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.
BMC Systems Biology, 2009

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance.
Bioinformatics, 2009

2008
Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.
Bioinformatics, 2008

Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences.
Proceedings of the Biocomputing 2008, 2008

2007
Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression Data.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006
A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.
Bioinformatics, 2006

2005
Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System.
Journal of Computational Biology, 2005


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