Tulio de Oliveira

According to our database, Tulio de Oliveira authored at least 18 papers between 2005 and 2026.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2026

OpenHealth Lake: Designing and testing a data lakehouse platform for health applications.

Danilo Silva, Monika Moir, Cheryl Baxter, Tulio de Oliveira, Joicymara Xavier, Marcel Dunaiski

CoRR, May, 2026

CholeraSeq: a comprehensive genomic pipeline for cholera surveillance and near real-time outbreak investigation.

Massimiliano S. Tagliamonte, Abhinav Sharma, Alberto Riva, Monika Moir, Marco Salemi, Cheryl Baxter, Tulio de Oliveira, Carla Mavian, Eduan Wilkinson

Bioinform., 2026

2023

SeqPanther: Sequence manipulation and mutation statistics toolset.

James Emmanuel San, Stephanie van Wyk, Houriiyah Tegally, Simeon Eche, Eduan Wilkinson, Aquillah M. Kanzi, Tulio de Oliveira, Anmol M. Kiran

J. Open Source Softw., 2023

2020

Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.

Sara Cleemput, Wim Dumon, Vagner Fonseca, Wasim Abdool Karim, Marta Giovanetti, Luiz Carlos Alcantara, Koen Deforche, Tulio de Oliveira

Bioinform., 2020

2019

Genome Detective: an automated system for virus identification from high-throughput sequencing data.

Michael Vilsker, Yumna Moosa, Sam Nooij, Vagner Fonseca, Yoika Ghysens, Korneel Dumon, Raf Pauwels, Luiz Carlos Alcantara, Ewout Vanden Eynden, Anne-Mieke Vandamme, Koen Deforche, Tulio de Oliveira

Bioinform., 2019

2018

Renewing Felsenstein's phylogenetic bootstrap in the era of big data.

Frédéric Lemoine, Jean-Baka Domelevo Entfellner, Eduan Wilkinson, Damien Correia, Miraine Dávila Felipe, Tulio de Oliveira, Olivier Gascuel

Nat., 2018

2016

The Development of Computational Biology in South Africa: Successes Achieved and Lessons Learnt.

Nicola J. Mulder, Alan Christoffels, Tulio de Oliveira, Junaid Gamieldien, Scott Hazelhurst, Fourie Joubert, Judit Kumuthini, Ché S. Pillay, Jacky L. Snoep, Özlem Tastan Bishop, Nicki Tiffin

PLoS Comput. Biol., 2016

Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource.

Megan Druce, Chantal Hulo, Patrick Masson, Paula Sommer, Ioannis Xenarios, Philippe Le Mercier, Tulio de Oliveira

Database J. Biol. Databases Curation, 2016

2015

Human immunodeficiency virus (HIV) proteomics resource at BioAfrica.

Megan Druce, Paula Sommer, Philippe Le Mercier, Chantal Hulo, Patrick Masson, Tulio de Oliveira

Proceedings of the 6th ACM Conference on Bioinformatics, 2015

2014

Southern African Treatment Resistance Network (SATuRN) RegaDB HIV drug resistance and clinical management database: supporting patient management, surveillance and research in southern Africa.

Justen Manasa, Richard Lessells, Theresa Rossouw, Kevindra Naidu, Cloete Van Vuuren, Dominique Goedhals, Gert van Zyl, P. Armand Bester, Andrew Skingsley, Katharine Stott, Siva Danaviah, Terusha Chetty, Lavanya Singh, Pravi Moodley, Collins Iwuji, Nuala McGrath, Christopher J. Seebregts, Tulio de Oliveira

Database J. Biol. Databases Curation, 2014

2013

RegaDB: community-driven data management and analysis for infectious diseases.

Pieter Libin, Gertjan Beheydt, Koen Deforche, Stijn Imbrechts, Fossie Ferreira, Kristel Van Laethem, Kristof Theys, Ana Patricia Carvalho, Joana Cavaco-Silva, Giuseppe Lapadula, Carlo Torti, Matthias Assel, Stefan Wesner, Joke Snoeck, Jean Ruelle, Annelies De Bel, Patrick Lacor, Paul De Munter, Eric Van Wijngaerden, Maurizio Zazzi, Rolf Kaiser, Ahidjo Ayouba, Martine Peeters, Tulio de Oliveira, Luiz Carlos Júnior Alcântara, Zehava Grossman, Peter M. A. Sloot, Dan Otelea, Simona Paraschiv, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme

Bioinform., 2013

Searching for virus phylotypes.

François Chevenet, Matthieu Jung, Martine Peeters, Tulio de Oliveira, Olivier Gascuel

Bioinform., 2013

An Investigation of Classification Algorithms for Predicting HIV Drug Resistance without Genotype Resistance Testing.

Pascal S. Brandt, Deshendran Moodley, Anban W. Pillay, Christopher J. Seebregts, Tulio de Oliveira

Proceedings of the Foundations of Health Information Engineering and Systems, 2013

2012

Modeling HIV-1 Drug Resistance as Episodic Directional Selection.

Ben Murrell, Tulio de Oliveira, Chris Seebregts, Sergei L. Kosakovsky Pond, Konrad Scheffler

PLoS Comput. Biol., 2012

2009

The RNA Virus Database.

Robert Belshaw, Tulio de Oliveira, Sidney Markowitz, Andrew Rambaut

Nucleic Acids Res., 2009

A standardized framework for accurate, high-throughput genotyping of recombinant and non-recombinant viral sequences.

Luiz Carlos Júnior Alcântara, Sharon Cassol, Pieter Libin, Koen Deforche, Oliver G. Pybus, Marc Van Ranst, Bernardo Galvão-Castro, Anne-Mieke Vandamme, Tulio de Oliveira

Nucleic Acids Res., 2009

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase.

Pascale Gaudet, Lydie Lane, Petra Fey, Alan J. Bridge, Sylvain Poux, Andrea H. Auchincloss, Kristian B. Axelsen, Silvia Braconi-Quintaje, Emmanuel Boutet, P. Brown, Elisabeth Coudert, Ruchira S. Datta, W. C. de Lima, Tulio de Oliveira, Severine Duvaud, N. Farriol-Mathis, Serenella Ferro-Rojas, Marc Feuermann, Alain Gateau, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Madelaine Moinat, Anastasia N. Nikolskaya, Ivo Pedruzzi, Catherine Rivoire, Bernd Roechert, Michel Schneider, E. Stanley, Michael Tognolli, Kimmen Sjölander, Lydie Bougueleret, Rex L. Chisholm, Amos Bairoch

Database J. Biol. Databases Curation, 2009

2005

An automated genotyping system for analysis of HIV-1 and other microbial sequences.

Tulio de Oliveira, Koen Deforche, Sharon Cassol, Mika Salminen, Dimitris Paraskevis, Chris Seebregts, Joke Snoeck, Estrelita J. Janse van Rensburg, Annemarie M. J. Wensing, David A. van de Vijver, Charles A. Boucher, Ricardo Camacho, Anne-Mieke Vandamme

Bioinform., 2005