Martin C. Frith

Orcid: 0000-0003-0998-2859

According to our database1, Martin C. Frith authored at least 29 papers between 1998 and 2023.

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Bibliography

2023
How to optimally sample a sequence for rapid analysis.
Bioinform., February, 2023

Improved DNA-Versus-Protein Homology Search for Protein Fossils.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2021
Minimally overlapping words for sequence similarity search.
Bioinform., 2021

2020
How sequence alignment scores correspond to probability models.
Bioinform., 2020

2018
A Simplified Description of Child Tables for Sequence Similarity Search.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

2017
Variable-order sequence modeling improves bacterial strain discrimination for Ion Torrent DNA reads.
BMC Bioinform., 2017

Training alignment parameters for arbitrary sequencers with LAST-TRAIN.
Bioinform., 2017

2016
ALP & FALP: C++ libraries for pairwise local alignment <i>E</i>-values.
Bioinform., 2016

2015
A Genetic Algorithm for Motif Finding Based on Statistical Significance.
Proceedings of the Bioinformatics and Biomedical Engineering, 2015

2014
A promoter-level mammalian expression atlas.
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Nat., 2014

Frameshift alignment: statistics and post-genomic applications.
Bioinform., 2014

A bioinformatician's guide to the forefront of suffix array construction algorithms.
Briefings Bioinform., 2014

2013
An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome.
Bioinform., 2013

2012
RecountDB: a database of mapped and count corrected transcribed sequences.
Nucleic Acids Res., 2012

Adding unaligned sequences into an existing alignment using MAFFT and LAST.
Bioinform., 2012

2011
CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences.
Nucleic Acids Res., 2011

Probabilistic alignments with quality scores: an application to short-read mapping toward accurate SNP/indel detection.
Bioinform., 2011

2010
Parameters for accurate genome alignment.
BMC Bioinform., 2010

In search of true reads: A classification approach to next generation sequencing data selection.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010

2009
MEME SUITE: tools for motif discovery and searching.
Nucleic Acids Res., 2009

2008
Discovering Sequence Motifs with Arbitrary Insertions and Deletions.
PLoS Comput. Biol., 2008

2007
Large-scale clustering of CAGE tag expression data.
BMC Bioinform., 2007

2004
CARRIE web service: automated transcriptional regulatory network inference and interactive analysis.
Nucleic Acids Res., 2004

MotifViz: an analysis and visualization tool for motif discovery.
Nucleic Acids Res., 2004

2003
Cluster-Buster: finding dense clusters of motifs in DNA sequences.
Nucleic Acids Res., 2003

Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence.
Nucleic Acids Res., 2003

SeqVISTA: a graphical tool for sequence feature visualization and comparison.
BMC Bioinform., 2003

2001
Detection of cis -element clusters in higher eukaryotic DNA.
Bioinform., 2001

1998
Theatre: A Novel Tool For The Comparative Investigation and Display of Evolutionary Diversity of Functional and Structural Features in DNA Sequences.
Proceedings of the German Conference on Bioinformatics, 1998


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