Hélène Touzet

According to our database, Hélène Touzet authored at least 36 papers between 1996 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data.

Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi

Briefings Bioinform., 2020

2018

DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data.

Chadi Saad, Laurent Noé, Hugues Richard, Julie Leclerc, Marie-Pierre Buisine, Hélène Touzet, Martin Figeac

BMC Bioinform., 2018

MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.

Pierre Pericard, Yoann Dufresne, Loïc Couderc, Samuel Blanquart, Hélène Touzet

Bioinform., 2018

2017

Efficient approximations of RNA kinetics landscape using non-redundant sampling.

Juraj Michalik, Hélène Touzet, Yann Ponty

Bioinform., 2017

2016

Approximate search of short patterns with high error rates using the 01^⁎0 lossless seeds.

Christophe Vroland, Mikaël Salson, Sébastien Bini, Hélène Touzet

J. Discrete Algorithms, 2016

On the Levenshtein Automaton and the Size of the Neighbourhood of a Word.

Hélène Touzet

Proceedings of the Language and Automata Theory and Applications, 2016

2015

Modeling Alternate RNA Structures in Genomic Sequences.

Azadeh Saffarian, Mathieu Giraud, Hélène Touzet

J. Comput. Biol., 2015

2014

Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems.

Robert Giegerich, Hélène Touzet

Algorithms, 2014

Lossless Seeds for Searching Short Patterns with High Error Rates.

Christophe Vroland, Mikaël Salson, Hélène Touzet

Proceedings of the Combinatorial Algorithms - 25th International Workshop, 2014

Searching for alternate RNA structures in genomic sequences.

Azadeh Saffarian, Mathieu Giraud, Hélène Touzet

Proceedings of the 1st Workshop on Computational Methods for Structural RNAs (CMSR 2014), 2014

2012

RNA Locally Optimal Secondary Structures.

Azadeh Saffarian, Mathieu Giraud, Antoine de Monte, Hélène Touzet

J. Comput. Biol., 2012

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

Evguenia Kopylova, Laurent Noé, Hélène Touzet

Bioinform., 2012

BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms.

Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet

Adv. Bioinformatics, 2012

2010

Alignments of RNA Structures.

Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

TFM-Explorer: mining <i>cis</i>-regulatory regions in genomes.

Laurie Tonon, Hélène Touzet, Jean-Stéphane Varré

Nucleic Acids Res., 2010

2009

Computational identification of protein-coding sequences by comparative analysis.

Arnaud Fontaine, Hélène Touzet

Int. J. Data Min. Bioinform., 2009

Self-overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching.

Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré

Proceedings of the Language and Automata Theory and Applications, 2009

2008

MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences.

Arnaud Fontaine, Antoine de Monte, Hélène Touzet

Nucleic Acids Res., 2008

2007

Comparing similar ordered trees in linear-time.

Hélène Touzet

J. Discrete Algorithms, 2007

Efficient and accurate P-value computation for Position Weight Matrices.

Hélène Touzet, Jean-Stéphane Varré

Algorithms Mol. Biol., 2007

2006

Predicting transcription factor binding sites using local over-representation and comparative genomics.

Matthieu Defrance, Hélène Touzet

BMC Bioinform., 2006

How to Compare Arc-Annotated Sequences: The Alignment Hierarchy.

Guillaume Blin, Hélène Touzet

Proceedings of the String Processing and Information Retrieval, 2006

Large Scale Matching for Position Weight Matrices.

Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré

Proceedings of the Combinatorial Pattern Matching, 17th Annual Symposium, 2006

2005

Decomposition algorithms for the tree edit distance problem.

Serge Dulucq, Hélène Touzet

J. Discrete Algorithms, 2005

A Linear Tree Edit Distance Algorithm for Similar Ordered Trees.

Hélène Touzet

Proceedings of the Combinatorial Pattern Matching, 16th Annual Symposium, 2005

2004

CARNAC: folding families of related RNAs.

Hélène Touzet, Olivier Perriquet

Nucleic Acids Res., 2004

2003

Tree edit distance with gaps.

Hélène Touzet

Inf. Process. Lett., 2003

Finding the common structure shared by two homologous RNAs.

Olivier Perriquet, Hélène Touzet, Max Dauchet

Bioinform., 2003

Analysis of Tree Edit Distance Algorithms.

Serge Dulucq, Hélène Touzet

Proceedings of the Combinatorial Pattern Matching, 14th Annual Symposium, 2003

2002

A Characterisation of Multiply Recursive Functions with Higman's Lemma.

Hélène Touzet

Inf. Comput., 2002

2001

Algorithms with polynomial interpretation termination proof.

Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet

J. Funct. Program., 2001

1998

Encoding the Hydra Battle as a Rewrite System.

Hélène Touzet

Proceedings of the Mathematical Foundations of Computer Science 1998, 1998

A Complex Example of a Simplifying Rewrite System.

Hélène Touzet

Proceedings of the Automata, Languages and Programming, 25th International Colloquium, 1998

Complexity Classes and Rewrite Systems with Polynomial Interpretation.

Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet

Proceedings of the Computer Science Logic, 12th International Workshop, 1998

1997

Propriétés combinatoires pour la terminaison de systèmes de réécriture. (Combinatorial properties for termination in term rewriting theory).

Hélène Touzet

PhD thesis, 1997

1996

An Ordinal Calculus for Proving Termination in Term Rewriting.

E. A. Cichon, Hélène Touzet

Proceedings of the Trees in Algebra and Programming, 1996