Le Ou-Yang

Orcid: 0000-0003-4007-4568

According to our database1, Le Ou-Yang authored at least 63 papers between 2014 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
scMIC: A Deep Multi-Level Information Fusion Framework for Clustering Single-Cell Multi-Omics Data.
IEEE J. Biomed. Health Informatics, December, 2023

Reading Multilevel 2-D Barcodes Using a Machine Learning Approach.
IEEE Internet Things J., July, 2023

A partially shared joint clustering framework for detecting protein complexes from multiple state-specific signed interaction networks.
Comput. Biol. Medicine, June, 2023

Inferring gene regulatory networks from single-cell gene expression data via deep multi-view contrastive learning.
Briefings Bioinform., January, 2023

scTSSR2: Imputing Dropout Events for Single-Cell RNA Sequencing Using Fast Two-Side Self-Representation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Self-representative kernel concept factorization.
Knowl. Based Syst., 2023

ETDock: A Novel Equivariant Transformer for Protein-Ligand Docking.
CoRR, 2023

MoVAE: A Variational AutoEncoder for Molecular Graph Generation.
Proceedings of the 2023 SIAM International Conference on Data Mining, 2023

Contrastive Subspace Clustering with Dissimilarity Regularization.
Proceedings of the International Conference on Machine Learning and Cybernetics, 2023

2022
Inferring Gene Co-Expression Networks by Incorporating Prior Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Identifying Gene Network Rewiring Based on Partial Correlation.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Anderson accelerating the preconditioned modulus approach for linear complementarity problems on second-order cones.
Numer. Algorithms, 2022

Predicting Protein-Ligand Binding Affinity with Equivariant Line Graph Network.
CoRR, 2022

MARS: A Motif-based Autoregressive Model for Retrosynthesis Prediction.
CoRR, 2022

DEMOC: a deep embedded multi-omics learning approach for clustering single-cell CITE-seq data.
Briefings Bioinform., 2022

Matrix factorization for biomedical link prediction and scRNA-seq data imputation: an empirical survey.
Briefings Bioinform., 2022

scDEA: differential expression analysis in single-cell RNA-sequencing data via ensemble learning.
Briefings Bioinform., 2022

2021
A Joint Graphical Model for Inferring Gene Networks Across Multiple Subpopulations and Data Types.
IEEE Trans. Cybern., 2021

Time-Varying Differential Network Analysis for Revealing Network Rewiring over Cancer Progression.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

WMLRR: A Weighted Multi-View Low Rank Representation to Identify Cancer Subtypes From Multiple Types of Omics Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

EnTSSR: A Weighted Ensemble Learning Method to Impute Single-Cell RNA Sequencing Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

The selection of the optimal parameter in the modulus-based matrix splitting algorithm for linear complementarity problems.
Comput. Optim. Appl., 2021

Differential network analysis by simultaneously considering changes in gene interactions and gene expression.
Bioinform., 2021

WDNE: an integrative graphical model for inferring differential networks from multi-platform gene expression data with missing values.
Briefings Bioinform., 2021

Recent advances in network-based methods for disease gene prediction.
Briefings Bioinform., 2021

Semantic Hierarchy Preserving Deep Hashing for Large-Scale Image Retrieval.
Proceedings of the 17th International Conference on Machine Vision and Applications, 2021

2020
A Machine Learning Approach to Blind Multi-Path Classification for Massive MIMO Systems.
IEEE/ACM Trans. Netw., 2020

Spectrum Sharing in mmWave Cellular Networks Using Clustering Algorithms.
IEEE/ACM Trans. Netw., 2020

A Machine Learning Approach to Phase Reference Estimation With Noise.
IEEE Trans. Commun., 2020

Identifying Gene Network Rewiring Using Robust Differential Graphical Model with Multivariate $t$t-Distribution.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Differential Network Analysis via Weighted Fused Conditional Gaussian Graphical Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Sparse regularized low-rank tensor regression with applications in genomic data analysis.
Pattern Recognit., 2020

Self-weighted adaptive structure learning for ASD diagnosis via multi-template multi-center representation.
Medical Image Anal., 2020

A graph regularized generalized matrix factorization model for predicting links in biomedical bipartite networks.
Bioinform., 2020

Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity.
Bioinform., 2020

scTSSR: gene expression recovery for single-cell RNA sequencing using two-side sparse self-representation.
Bioinform., 2020

2019
Joint Learning of Multiple Differential Networks With Latent Variables.
IEEE Trans. Cybern., 2019

Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Semantic Hierarchy Preserving Deep Hashing for Large-scale Image Retrieval.
CoRR, 2019

Predicting synthetic lethal interactions in human cancers using graph regularized self-representative matrix factorization.
BMC Bioinform., 2019

EnImpute: imputing dropout events in single-cell RNA-sequencing data via ensemble learning.
Bioinform., 2019

DiffNetFDR: differential network analysis with false discovery rate control.
Bioinform., 2019

Multi-template Based Auto-Weighted Adaptive Structural Learning for ASD Diagnosis.
Proceedings of the Machine Learning in Medical Imaging - 10th International Workshop, 2019

Graph Convolutional Network Analysis for Mild Cognitive Impairment Prediction.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Sparse Low-rank Constrained Adaptive Structure Learning using Multi-template for Autism Spectrum Disorder Diagnosis.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Improve L2-normalized Softmax with Exponential Moving Average.
Proceedings of the International Joint Conference on Neural Networks, 2019

2018
Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

DiffGraph: an R package for identifying gene network rewiring using differential graphical models.
Bioinform., 2018

RepLong: de novo repeat identification using long read sequencing data.
Bioinform., 2018

2017
Protein Complex Detection via Effective Integration of Base Clustering Solutions and Co-Complex Affinity Scores.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Node-based differential network analysis in genomics.
Comput. Biol. Chem., 2017

A multi-network clustering method for detecting protein complexes from multiple heterogeneous networks.
BMC Bioinform., 2017

Incorporating prior information into differential network analysis using non-paranormal graphical models.
Bioinform., 2017

2016
Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks.
BMC Bioinform., 2016

Regularized logistic regression with network-based pairwise interaction for biomarker identification in breast cancer.
BMC Bioinform., 2016

Protein complex detection based on partially shared multi-view clustering.
BMC Bioinform., 2016

A two-layer integration framework for protein complex detection.
BMC Bioinform., 2016

Identifying protein complexes via multi-network clustering.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Detecting Protein Complexes from Signed Protein-Protein Interaction Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Determining minimum set of driver nodes in protein-protein interaction networks.
BMC Bioinform., 2015

2014
Microbial community pattern detection in human body habitats via ensemble clustering framework.
BMC Syst. Biol., 2014

Detecting overlapping protein complexes based on a generative model with functional and topological properties.
BMC Bioinform., 2014

Detecting temporal protein complexes from dynamic protein-protein interaction networks.
BMC Bioinform., 2014


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