Makoto Taiji
Orcid: 0000-0002-5317-0500
According to our database1,
Makoto Taiji
authored at least 30 papers
between 1994 and 2022.
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Bibliography
2022
IEEE Access, 2022
2021
Hardware acceleration of tensor-structured multilevel ewald summation method on MDGRAPE-4A, a special-purpose computer system for molecular dynamics simulations.
Proceedings of the International Conference for High Performance Computing, 2021
2020
Proceedings of the IEEE International Conference on Cluster Computing, 2020
2015
Assessment and acceleration of binding energy calculations for protein-ligand complexes by the fragment molecular orbital method.
J. Comput. Chem., 2015
2014
A new set of atomic radii for accurate estimation of solvation free energy by Poisson-Boltzmann solvent model.
J. Comput. Chem., 2014
Petascale molecular dynamics simulation using the fast multipole method on K computer.
Comput. Phys. Commun., 2014
2011
Comput. J., 2011
2009
High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations.
PLoS Comput. Biol., 2009
Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach.
J. Comput. Chem., 2009
Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems.
J. Comput. Chem., 2009
A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation.
Comput. Sci. Res. Dev., 2009
42 TFlops hierarchical <i>N</i>-body simulations on GPUs with applications in both astrophysics and turbulence.
Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009
A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation.
Proceedings of the NASA/ESA Conference on Adaptive Hardware and Systems, 2009
2008
Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model.
SIAM J. Sci. Comput., 2008
Proceedings of the Tenth International Workshop on System-Level Interconnect Prediction (SLIP 2008), 2008
2007
A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3.
Proceedings of the ACM/IEEE Conference on High Performance Networking and Computing, 2007
Proceedings of the IEEE Symposium on Foundations of Computational Intelligence, 2007
2006
Gordon Bell finalists II - A 55 TFLOPS simulation of amyloid-forming peptides from yeast prion Sup35 with the special-purpose computer system MDGRAPE-3.
Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006
2004
2003
Protein Explorer: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations.
Proceedings of the ACM/IEEE SC2003 Conference on High Performance Networking and Computing, 2003
MDGRAPE-3: A Petaflops Special-Purpose Computer System for Molecular Dynamics Simulations.
Proceedings of the Parallel Computing: Software Technology, 2003
2000
On the Power of Nonlinear Mappings in Switching Map Systems.
Proceedings of the Unconventional Models of Computation, 2000
1999
Proceedings of the Advances in Artificial Life, 5th European Conference, 1999
1998
Scientific simulations with special purpose computers - the GRAPE systems.
Wiley, ISBN: 978-0-471-96946-4, 1998
1997
Fast and accurate molecular dynamics simulation of a protein using a special-purpose computer.
J. Comput. Chem., 1997
1995
Proceedings of the Proceedings Supercomputing '95, San Diego, CA, USA, December 4-8, 1995, 1995
GRAPE-4: A Special-Purpose Computer for Gravitational N-Body Problems.
Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995
1994
GRAPE-4: a one-Tflops special-purpose computer for astrophysical <i>N</i>-body problem.
Proceedings of the Proceedings Supercomputing '94, 1994
GRAPE-4: A Teraflops Massively Parallel Special-Purpose Computer System for Astrophysical itN-body Simulations.
Proceedings of the 8th International Symposium on Parallel Processing, 1994
HARP-1: A Special-Purpose Computer for itN-body Simulation with the Hermite Integrator.
Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994