Tsuyoshi Hamada

According to our database, Tsuyoshi Hamada authored at least 27 papers between 1998 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2017

Biomarker correlation network in colorectal carcinoma by tumor anatomic location.

Reiko Nishihara, Kimberly Glass, Kosuke Mima, Tsuyoshi Hamada, Jonathan A. Nowak, Zhi Rong Qian, Peter Kraft, Edward L. Giovannucci, Charles S. Fuchs, Andrew T. Chan, John Quackenbush, Shuji Ogino, Jukka-Pekka Onnela

BMC Bioinform., 2017

2016

MrBayes tgMC³++: A High Performance and Resource-Efficient GPU-Oriented Phylogenetic Analysis Method.

Cheng Ling, Tsuyoshi Hamada, Jing-Yang Gao, Guoguang Zhao, Donghong Sun, Weifeng Shi

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

2015

An Open Approach to Autonomous Vehicles.

Shinpei Kato, Eijiro Takeuchi, Yoshio Ishiguro, Yoshiki Ninomiya, Kazuya Takeda, Tsuyoshi Hamada

IEEE Micro, 2015

Optimizing the Bayesian Inference of Phylogeny on Graphic Processors.

Cheng Ling, Chunbao Zhou, Arong Luo, Guoguang Zhao, Tsuyoshi Hamada, Xiaoyan Zhu

Proceedings of the 15th IEEE/ACM International Symposium on Cluster, 2015

2014

A GRASS GIS parallel module for radio-propagation predictions.

Lucas Benedicic, Felipe A. Cruz, Tsuyoshi Hamada, Peter Korosec

Int. J. Geogr. Inf. Sci., 2014

2013

Up to 700k GPU Cores, Kepler, and the Exascale Future for Simulations of Star Clusters Around Black Holes.

Peter Berczik, Rainer Spurzem, Shiyan Zhong, Long Wang, Keigo Nitadori, Tsuyoshi Hamada, Alexander Veles

Proceedings of the Supercomputing - 28th International Supercomputing Conference, 2013

2012

High performance phylogenetic analysis on CUDA-compatible GPUs.

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada

SIGARCH Comput. Archit. News, 2012

2011

Astrophysical particle simulations with large custom GPU clusters on three continents.

Rainer Spurzem, Peter Berczik, Ingo Berentzen, Keigo Nitadori, Tsuyoshi Hamada, Guillermo Marcus Martinez, Andreas Kugel, Reinhard Männer, J. Fiestas, Robi Banerjee, Ralf Klessen

Comput. Sci. Res. Dev., 2011

Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns.

Rio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba, Tsuyoshi Hamada

Comput. Phys. Commun., 2011

Astrophysical SPH Simulations with raceSPH Library.

Lei Liu, Guillermo Marcus Martinez, Peter Berczik, Tsuyoshi Hamada, Ingo Berentzen, Andreas Kugel, Reinhard Männer, Robi Banerjee, Ralf Klessen, Rainer Spurzem

Proceedings of the 14th IEEE International Conference on Computational Science and Engineering, 2011

2010

Implementation of a programming environment with a multithread model for reconfigurable systems.

Keisuke Dohi, Yuichiro Shibata, Tsuyoshi Hamada, Tomonari Masada, Kiyoshi Oguri, Duncan A. Buell

SIGARCH Comput. Archit. News, 2010

Biomolecular Electrostatics Simulation by an FMM-based BEM on 512 GPUs

Rio Yokota, Tsuyoshi Hamada, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba

CoRR, 2010

190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs.

Tsuyoshi Hamada, Keigo Nitadori

Proceedings of the Conference on High Performance Computing Networking, 2010

Highly efficient mapping of the Smith-Waterman algorithm on CUDA-compatible GPUs.

Keisuke Dohi, Khaled Benkrid, Cheng Ling, Tsuyoshi Hamada, Yuichiro Shibata

Proceedings of the 21st IEEE International Conference on Application-specific Systems Architectures and Processors, 2010

2009

A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation.

Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji

Comput. Sci. Res. Dev., 2009

Bag of Timestamps: A Simple and Efficient Bayesian Chronological Mining.

Tomonari Masada, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri

Proceedings of the Advances in Data and Web Management, Joint International Conferences, 2009

42 TFlops hierarchical <i>N</i>-body simulations on GPUs with applications in both astrophysics and turbulence.

Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji

Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009

A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs.

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada

Proceedings of the IEEE 7th Symposium on Application Specific Processors, 2009

Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices.

Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri

Proceedings of the Next-Generation Applied Intelligence, 2009

Dynamic hyperparameter optimization for bayesian topical trend analysis.

Tomonari Masada, Daiji Fukagawa, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri

Proceedings of the 18th ACM Conference on Information and Knowledge Management, 2009

Accelerating Phase Correlation Functions Using GPU and FPGA.

Kentaro Matsuo, Tsuyoshi Hamada, Masayuki Miyoshi, Yuichiro Shibata, Kiyoshi Oguri

Proceedings of the NASA/ESA Conference on Adaptive Hardware and Systems, 2009

A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation.

Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji

Proceedings of the NASA/ESA Conference on Adaptive Hardware and Systems, 2009

Bayesian Multi-topic Microarray Analysis with Hyperparameter Reestimation.

Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri

Proceedings of the Advanced Data Mining and Applications, 5th International Conference, 2009

2005

PGR: A Software Package for Reconfigurable Super-Computing.

Tsuyoshi Hamada, Naohito Nakasato

Proceedings of the 2005 International Conference on Field Programmable Logic and Applications (FPL), 2005

Astrophysical Hydrodynamics Simulations on a Reconfigurable System.

Naohito Nakasato, Tsuyoshi Hamada

Proceedings of the 13th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2005), 2005

Massively Parallel Processors Generator for Reconfigurable System.

Tsuyoshi Hamada, Naohito Nakasato

Proceedings of the 13th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2005), 2005

1998

PROGRAPE-1: A Programmable Special-Purpose Computer for Many-Body Simulations.

Tsuyoshi Hamada, Toshiyuki Fukushige, Atsushi Kawai, Junichiro Makino

Proceedings of the 6th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM '98), 1998